BQ623389

Overview
NameBQ623389
Unique NameBQ623389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length432
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10244 contig Csv1_Contig10244:551..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 2.552e-57
Identity = 112/138 (81.16%), Postives = 120/138 (86.96%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+   QVVLMGL+EG+R+ G P +GEG D LYPG   FDPLGLADDP   AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PVANNAW YAT FVPG
Sbjct:   14 VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGP-LGEGLDPLYPGDA-FDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPG 149
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 9.696e-57
Identity = 108/138 (78.26%), Postives = 122/138 (88.41%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIF+EGGLDYLGNPNL+HAQSILA+   QVVLMG VEG+R+ G P +GEG D LYPGG  FDPLGLADDP +FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ +PVANNAW +AT FVPG
Sbjct:  129 VWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGP-LGEGLDPLYPGGA-FDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPG 264
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 2.160e-56
Identity = 110/138 (79.71%), Postives = 120/138 (86.96%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG +EG+R+ G P +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL+DHL +PV NNAW YAT FVPG
Sbjct:  131 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPG 266
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 2.160e-56
Identity = 112/138 (81.16%), Postives = 119/138 (86.23%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  125 VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 260
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 2.821e-56
Identity = 111/138 (80.43%), Postives = 119/138 (86.23%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+RI G P +GE  D +YPGG  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:   70 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 205
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 2.821e-56
Identity = 112/138 (81.16%), Postives = 119/138 (86.23%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  129 VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 264
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 2.821e-56
Identity = 111/138 (80.43%), Postives = 119/138 (86.23%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+RI G P +GE  D +YPGG  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  119 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 254
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 4.812e-56
Identity = 110/138 (79.71%), Postives = 119/138 (86.23%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+RI G P +GE  D +YPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PV NNAW YAT FVPG
Sbjct:  138 VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPG 273
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 4.812e-56
Identity = 112/138 (81.16%), Postives = 119/138 (86.23%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  131 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPG 266
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 6.285e-56
Identity = 112/138 (81.16%), Postives = 119/138 (86.23%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct:  131 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 266
The following BLAST results are available for this feature:
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB22_PINSY2.552e-5781.16Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB215_PEA9.696e-5778.26Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB27_TOBAC2.160e-5679.71Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB22_ORYSJ2.160e-5681.16Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_CUCSA2.821e-5680.43Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_ORYSJ2.821e-5681.16Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA2.821e-5680.43Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY4.812e-5679.71Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB25_PETSP4.812e-5681.16Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB2G_SOLLC6.285e-5681.16Chlorophyll a-b binding protein 3C, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00480 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00480 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623389 ID=BQ623389; Name=BQ623389; organism=Citrus sinensis; type=EST; length=432bp
GGTTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCCTTGACT
ACTTGGGAAACCCCAACCTTGTTCATGCTCAAAGCATTCTGGCTGTCCTG
GGATTCCAGGTTGTCCTCATGGGGCTCGTTGAGGGTTTCCGTATCAATGG
CCTCCCTGGTGTCGGAGAAGGAAACGACCTCTACCCTGGTGGCCAATATT
TTGATCCCCTTGGCCTTGCTGATGATCCTGTTACGTTTGCTGAACTCAAG
GTGAAGGAAATCAAGAATGGCAGGCTAGCTATGTTTTCCATGTTTGGTTT
CTTTGTCCAAGCTATTGTGACAGGCAAAGGTCCCTTGGAGAACCTCCTGG
ACCACCTTGAGAACCCTGTTGCCAACAATGCTTGGGTCTATGCTACCAAG
TTTGTACCTGGATCATAAACTGATTATGATTA
back to top