BQ623389

Overview
NameBQ623389
Unique NameBQ623389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length432
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 6.285e-56
Identity = 111/138 (80.43%), Postives = 119/138 (86.23%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  132 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPG 267
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 6.285e-56
Identity = 109/138 (78.99%), Postives = 118/138 (85.51%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QV+LMG VEG+RI G P +GE  D +YPGG  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL  PV NNAW YAT FVPG
Sbjct:  127 VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPG 262
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 6.285e-56
Identity = 112/138 (81.16%), Postives = 119/138 (86.23%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  131 VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVIDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPG 266
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 6.285e-56
Identity = 110/138 (79.71%), Postives = 118/138 (85.51%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAGAQIFSEGGLDY GNPNL+HAQSILA+   QVVLMGL+EG+R+ G   +GEG D L PGG  FDPLGLADDP   AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PVANNAW YAT FVPG
Sbjct:  130 VWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGG-GTLGEGLDPLLPGGA-FDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPG 265
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 6.285e-56
Identity = 110/139 (79.14%), Postives = 120/139 (86.33%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 415
            VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DH+ +PV NNAW YAT FVPG+
Sbjct:  126 VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGN 262
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 8.208e-56
Identity = 111/138 (80.43%), Postives = 119/138 (86.23%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  131 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 266
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 8.208e-56
Identity = 111/138 (80.43%), Postives = 119/138 (86.23%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct:  130 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVIDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 265
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 8.208e-56
Identity = 111/138 (80.43%), Postives = 119/138 (86.23%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  133 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPG 268
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 8.208e-56
Identity = 108/138 (78.26%), Postives = 117/138 (84.78%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ G   +GE  D LYPGG  FDPLGLA DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct:  129 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 265
[Close]
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.072e-55
Identity = 110/138 (79.71%), Postives = 119/138 (86.23%), Query Frame = 2 
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  129 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 264
The following BLAST results are available for this feature:
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB28_PEA6.285e-5680.43Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_SOYBN6.285e-5678.99Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB23_PETSP6.285e-5681.16Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_PINTH6.285e-5679.71Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_MAIZE6.285e-5679.14Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB24_TOBAC8.208e-5680.43Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB24_PETSP8.208e-5680.43Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_PEA8.208e-5680.43Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_SINAL8.208e-5678.26Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_TOBAC1.072e-5579.71Chlorophyll a-b binding protein 21, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00480 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00480 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623389 ID=BQ623389; Name=BQ623389; organism=Citrus sinensis; type=EST; length=432bp
GGTTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCCTTGACT
ACTTGGGAAACCCCAACCTTGTTCATGCTCAAAGCATTCTGGCTGTCCTG
GGATTCCAGGTTGTCCTCATGGGGCTCGTTGAGGGTTTCCGTATCAATGG
CCTCCCTGGTGTCGGAGAAGGAAACGACCTCTACCCTGGTGGCCAATATT
TTGATCCCCTTGGCCTTGCTGATGATCCTGTTACGTTTGCTGAACTCAAG
GTGAAGGAAATCAAGAATGGCAGGCTAGCTATGTTTTCCATGTTTGGTTT
CTTTGTCCAAGCTATTGTGACAGGCAAAGGTCCCTTGGAGAACCTCCTGG
ACCACCTTGAGAACCCTGTTGCCAACAATGCTTGGGTCTATGCTACCAAG
TTTGTACCTGGATCATAAACTGATTATGATTA
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