BQ623389

Overview
NameBQ623389
Unique NameBQ623389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length432
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10244 contig Csv1_Contig10244:551..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.711e-53
Identity = 106/138 (76.81%), Postives = 118/138 (85.51%), Query Frame = 2
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGLDYLGNP+LVHAQSIL++   QV+LMG VEG+R+ G P +GE  D LYPGG  FDPLGLA+DP   AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct:  128 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGP-LGEIVDPLYPGGS-FDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 263          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.504e-53
Identity = 105/139 (75.54%), Postives = 118/139 (84.89%), Query Frame = 2
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 415
            VWFKAGAQIFSEGGLDYLG+P L+HAQ+I+A L  QVVLMGL+EG+R+NG P  GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NL DHL +P  NNA+  ATKF P +
Sbjct:  120 VWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPA-GEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTPSA 256          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 8.494e-53
Identity = 103/137 (75.18%), Postives = 116/137 (84.67%), Query Frame = 2
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVP 409
            +WFKAGA IF +GGL+YLGNP+L+HAQ+I+A L  QVVLMGLVEG+R+NG P  GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHL NP  NNA+ YATKF P
Sbjct:  138 IWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPA-GEGLDPLYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.109e-52
Identity = 103/136 (75.74%), Postives = 113/136 (83.09%), Query Frame = 2
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVP 409
            VW KAG+QIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ G P     + LYPGG  FDPLGLA+DP  FAELKVKE KNGRLAMFSMFGFF+QAIVTGKGPLENL DHL +PV NNAW YAT FVP
Sbjct:  131 VWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGS-FDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVP 265          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.228e-52
Identity = 105/137 (76.64%), Postives = 117/137 (85.40%), Query Frame = 2
Query:    5 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            WFKAG+QIFS+GGLDYLGNP+LVHAQS+LA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLA+ P  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+L DH+ +PV NNAW+ AT FVPG
Sbjct:  131 WFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGP-LGEIVDPLYPGGS-FDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPG 265          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 7.950e-51
Identity = 104/138 (75.36%), Postives = 113/138 (81.88%), Query Frame = 2
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAG+QIFSEGGL + GNP+LVHAQSILA+   QVVLMG VEG+ + G   +GE  D LY GG  FDPLGL DDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PV NNAW YAT FVPG
Sbjct:  128 VWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAG-GRLGEVVDPLYLGGS-FDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPG 263          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.693e-48
Identity = 97/139 (69.78%), Postives = 111/139 (79.86%), Query Frame = 2
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG--VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            VWFKAGAQIF++GGL+YLGN +L+HAQSI+A L  QVVLMGL E +R NG     + + + LYPGG  FDPLGLADDP TFAELKVKEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHL +P  N A+  ATKF PG
Sbjct:  115 VWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.926e-45
Identity = 92/124 (74.19%), Postives = 100/124 (80.65%), Query Frame = 2
Query:   44 LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            LDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ G   +GE  D LYPGG  FDPL    DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGS-FDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 123          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.518e-44
Identity = 98/139 (70.50%), Postives = 108/139 (77.70%), Query Frame = 2
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 415
            VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+   +V+LMG VEG+RI   P +GE  D LYPG   FD LGLA+D   FAELKVKE+KNGRLAMFSMFGFFVQAIV+ K  LENL DHL   V NNA    T FVPG+
Sbjct:  133 VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGP-LGEVTDPLYPGS--FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPGN 268          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.359e-42
Identity = 92/117 (78.63%), Postives = 98/117 (83.76%), Query Frame = 2
Query:   65 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            +LVHAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPG 115          
The following BLAST results are available for this feature:
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB23_APIGR1.711e-5376.81Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLMO6.504e-5375.54Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA8.494e-5375.18Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PETSP1.109e-5275.74Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_WHEAT3.228e-5276.64Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB48_MAIZE7.950e-5175.36Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_DUNTE3.693e-4869.78Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_RAPSA2.926e-4574.19Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2_MALDO5.518e-4470.50Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2D_SOLLC1.359e-4278.63Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00480 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00480 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623389 ID=BQ623389; Name=BQ623389; organism=Citrus sinensis; type=EST; length=432bp
GGTTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCCTTGACT
ACTTGGGAAACCCCAACCTTGTTCATGCTCAAAGCATTCTGGCTGTCCTG
GGATTCCAGGTTGTCCTCATGGGGCTCGTTGAGGGTTTCCGTATCAATGG
CCTCCCTGGTGTCGGAGAAGGAAACGACCTCTACCCTGGTGGCCAATATT
TTGATCCCCTTGGCCTTGCTGATGATCCTGTTACGTTTGCTGAACTCAAG
GTGAAGGAAATCAAGAATGGCAGGCTAGCTATGTTTTCCATGTTTGGTTT
CTTTGTCCAAGCTATTGTGACAGGCAAAGGTCCCTTGGAGAACCTCCTGG
ACCACCTTGAGAACCCTGTTGCCAACAATGCTTGGGTCTATGCTACCAAG
TTTGTACCTGGATCATAAACTGATTATGATTA
back to top