BQ623389

Overview
NameBQ623389
Unique NameBQ623389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length432
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10244 contig Csv1_Contig10244:551..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.318e-42
Identity = 91/117 (77.78%), Postives = 98/117 (83.76%), Query Frame = 2
Query:   65 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            +LVHAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 264          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.318e-42
Identity = 91/117 (77.78%), Postives = 98/117 (83.76%), Query Frame = 2
Query:   65 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            +LVHAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 264          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.955e-42
Identity = 90/117 (76.92%), Postives = 98/117 (83.76%), Query Frame = 2
Query:   65 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            +LVHAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DH+ +PV NNAW +AT FVPG
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPG 266          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.955e-42
Identity = 90/117 (76.92%), Postives = 98/117 (83.76%), Query Frame = 2
Query:   65 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412
            +LVHAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DH+ +PV NNAW +AT FVPG
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPG 266          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.193e-30
Identity = 75/118 (63.56%), Postives = 88/118 (74.58%), Query Frame = 2
Query:   68 LVHAQSILAVLGFQVVLMGLVEGFRI-NGLPG-VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNA-WVYATKFVP 409
            L+HA+S+LA+L  QV+LMG VEG+R  N  PG  GE  D LYPGG  FDPLGLADDP TF ELKVKEIKNGRLAM  M GF+ QAIVTG+GP+EN L HL++P A+N      T+F P
Sbjct:    5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGP-FDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.189e-26
Identity = 67/126 (53.17%), Postives = 83/126 (65.87%), Query Frame = 2
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 379
            VWFK GA +     L+Y G    +    +LAV+  +VVL+G  E +RI    G+   + L+PGG  FDPLGLA DP   A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL +P  NN
Sbjct:  146 VWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITN--GLDFEDKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.156e-25
Identity = 60/80 (75.00%), Postives = 66/80 (82.50%), Query Frame = 2
Query:    2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTF 238
            VWFKAG+QIF EGGLDYLGNPNLVHAQSILA+   QVVLMG VEG+R+ G P +GEG D LYPGG  FDPLGLA+DP  F
Sbjct:  128 VWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGP-LGEGLDQLYPGGA-FDPLGLAEDPEAF 205          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.258e-20
Identity = 45/87 (51.72%), Postives = 60/87 (68.97%), Query Frame = 2
Query:  119 MGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 379
            +GL +GF        G GN  YPGG +F+PLG   D  +  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NLLDH+ +PV NN
Sbjct:  188 LGLEKGFG-------GSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.479e-20
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 2
Query:  164 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 379
            G G+  YPGG  F+PLG   D  +  ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NLLDHL +PV NN
Sbjct:  194 GSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.201e-18
Identity = 54/122 (44.26%), Postives = 72/122 (59.02%), Query Frame = 2
Query:    5 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 370
            W  AG     +G   YLG P      SI  ++  +V+++G +E F+ N    +     LYPGG++FDPLGLA DPV  A+L++ EIK+ RLAM    GF VQA  TGKGPL N   HL +P+
Sbjct:  162 WQDAGKVELVDGS-SYLGQPLPF---SISTLIWIEVLVIGYIE-FQRNA--ELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276          
The following BLAST results are available for this feature:
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB2C_SOLLC2.318e-4277.78Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.318e-4277.78Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC3.955e-4276.92Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC3.955e-4276.92Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_EUGGR1.193e-3063.56Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB26_ARATH5.189e-2653.17Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB21_SILPR1.156e-2575.00Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB23_PEA3.258e-2051.72Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB13_SOLLC9.479e-2059.72Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB4B_ARATH5.201e-1844.26Chlorophyll a-b binding protein CP29.2, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00480 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00480 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623389 ID=BQ623389; Name=BQ623389; organism=Citrus sinensis; type=EST; length=432bp
GGTTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCCTTGACT
ACTTGGGAAACCCCAACCTTGTTCATGCTCAAAGCATTCTGGCTGTCCTG
GGATTCCAGGTTGTCCTCATGGGGCTCGTTGAGGGTTTCCGTATCAATGG
CCTCCCTGGTGTCGGAGAAGGAAACGACCTCTACCCTGGTGGCCAATATT
TTGATCCCCTTGGCCTTGCTGATGATCCTGTTACGTTTGCTGAACTCAAG
GTGAAGGAAATCAAGAATGGCAGGCTAGCTATGTTTTCCATGTTTGGTTT
CTTTGTCCAAGCTATTGTGACAGGCAAAGGTCCCTTGGAGAACCTCCTGG
ACCACCTTGAGAACCCTGTTGCCAACAATGCTTGGGTCTATGCTACCAAG
TTTGTACCTGGATCATAAACTGATTATGATTA
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