BQ623389
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 2.318e-42 Identity = 91/117 (77.78%), Postives = 98/117 (83.76%), Query Frame = 2 Query: 65 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412 +LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 264
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 2.318e-42 Identity = 91/117 (77.78%), Postives = 98/117 (83.76%), Query Frame = 2 Query: 65 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412 +LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 264
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 3.955e-42 Identity = 90/117 (76.92%), Postives = 98/117 (83.76%), Query Frame = 2 Query: 65 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412 +LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DH+ +PV NNAW +AT FVPG Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPG 266
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 3.955e-42 Identity = 90/117 (76.92%), Postives = 98/117 (83.76%), Query Frame = 2 Query: 65 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 412 +LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DH+ +PV NNAW +AT FVPG Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPG 266
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.193e-30 Identity = 75/118 (63.56%), Postives = 88/118 (74.58%), Query Frame = 2 Query: 68 LVHAQSILAVLGFQVVLMGLVEGFRI-NGLPG-VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNA-WVYATKFVP 409 L+HA+S+LA+L QV+LMG VEG+R N PG GE D LYPGG FDPLGLADDP TF ELKVKEIKNGRLAM M GF+ QAIVTG+GP+EN L HL++P A+N T+F P Sbjct: 5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGP-FDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 5.189e-26 Identity = 67/126 (53.17%), Postives = 83/126 (65.87%), Query Frame = 2 Query: 2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 379 VWFK GA + L+Y G + +LAV+ +VVL+G E +RI G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL +P NN Sbjct: 146 VWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITN--GLDFEDKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 1.156e-25 Identity = 60/80 (75.00%), Postives = 66/80 (82.50%), Query Frame = 2 Query: 2 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTF 238 VWFKAG+QIF EGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+ G P +GEG D LYPGG FDPLGLA+DP F Sbjct: 128 VWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGP-LGEGLDQLYPGGA-FDPLGLAEDPEAF 205
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 3.258e-20 Identity = 45/87 (51.72%), Postives = 60/87 (68.97%), Query Frame = 2 Query: 119 MGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 379 +GL +GF G GN YPGG +F+PLG D + ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NLLDH+ +PV NN Sbjct: 188 LGLEKGFG-------GSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 9.479e-20 Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 2 Query: 164 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 379 G G+ YPGG F+PLG D + ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NLLDHL +PV NN Sbjct: 194 GSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 5.201e-18 Identity = 54/122 (44.26%), Postives = 72/122 (59.02%), Query Frame = 2 Query: 5 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 370 W AG +G YLG P SI ++ +V+++G +E F+ N + LYPGG++FDPLGLA DPV A+L++ EIK+ RLAM GF VQA TGKGPL N HL +P+ Sbjct: 162 WQDAGKVELVDGS-SYLGQPLPF---SISTLIWIEVLVIGYIE-FQRNA--ELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276 The following BLAST results are available for this feature:
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 76
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623389 ID=BQ623389; Name=BQ623389; organism=Citrus sinensis; type=EST; length=432bpback to top |