BQ623389

Overview
NameBQ623389
Unique NameBQ623389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length432
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10244 contig Csv1_Contig10244:551..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.581e-17
Identity = 53/122 (43.44%), Postives = 72/122 (59.02%), Query Frame = 2
Query:    5 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 370
            W  AG     +G   YLG P      SI  ++  +V+++G +E F+ N    +     LYPGG++FDPLGLA DP   A+L++ EIK+ RLAM +  GF VQA  TGKGPL N   HL +P+
Sbjct:  165 WQDAGKVELVDGS-SYLGQPLPF---SISTLIWIEVLVIGYIE-FQRNA--ELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.029e-15
Identity = 54/127 (42.52%), Postives = 66/127 (51.97%), Query Frame = 2
Query:    5 WFKAGA-QIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLENPVANN 379
            W KA       +G   YLGNP  V   ++  +L  + + +   E  R             YPGG  FDPLG + DP  F ELK+KEIKNGRLAM +  GF V Q+   G GPLENL  HL +P  NN
Sbjct:  112 WVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEKD---PEKKKYPGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.029e-15
Identity = 56/127 (44.09%), Postives = 69/127 (54.33%), Query Frame = 2
Query:    5 WFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLENPVANN 379
            W KA       GG   YLG P  V   ++  +L  + + +  VE  R   +    E    YPGG  FDPLG + DP  F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENL  HL +P  NN
Sbjct:  113 WVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR--SMEKDSEKKK-YPGGA-FDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.122e-12
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 2
Query:  137 FRINGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 367
            F  N L G   G   YPGG +FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HL +P
Sbjct:  184 FPNNKLTGTDVG---YPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.122e-12
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 2
Query:  137 FRINGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 367
            F  N L G   G   YPGG +FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HL +P
Sbjct:  184 FPNNKLTGTDVG---YPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.117e-11
Identity = 47/114 (41.23%), Postives = 62/114 (54.39%), Query Frame = 2
Query:    5 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 346
            W  AG     EG   YLG P      S+  ++  +V+++G +E  R + L        +YPGG YFDPLGLA DP     LK+ EIK+ RLAM +   F +QA  TGKGP+  L
Sbjct:  166 WQDAGKVELVEGS-SYLGQPLPF---SLTTLIWIEVLVVGYIEFQRNSELD---PEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271          
The following BLAST results are available for this feature:
BLAST of BQ623389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB4A_ARATH2.581e-1743.44Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB121_HORVU7.029e-1542.52Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC7.029e-1544.09Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_SOLLC1.122e-1250.00Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY1.122e-1250.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB4C_ARATH2.117e-1141.23Chlorophyll a-b binding protein CP29.3, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00480 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00480 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623389 ID=BQ623389; Name=BQ623389; organism=Citrus sinensis; type=EST; length=432bp
GGTTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCCTTGACT
ACTTGGGAAACCCCAACCTTGTTCATGCTCAAAGCATTCTGGCTGTCCTG
GGATTCCAGGTTGTCCTCATGGGGCTCGTTGAGGGTTTCCGTATCAATGG
CCTCCCTGGTGTCGGAGAAGGAAACGACCTCTACCCTGGTGGCCAATATT
TTGATCCCCTTGGCCTTGCTGATGATCCTGTTACGTTTGCTGAACTCAAG
GTGAAGGAAATCAAGAATGGCAGGCTAGCTATGTTTTCCATGTTTGGTTT
CTTTGTCCAAGCTATTGTGACAGGCAAAGGTCCCTTGGAGAACCTCCTGG
ACCACCTTGAGAACCCTGTTGCCAACAATGCTTGGGTCTATGCTACCAAG
TTTGTACCTGGATCATAAACTGATTATGATTA
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