BQ623392

Overview
NameBQ623392
Unique NameBQ623392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7034 contig Csv1_Contig7034:820..1432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.805e-16
Identity = 45/116 (38.79%), Postives = 66/116 (56.90%), Query Frame = 3
Query:   15 SCKFDKSKIAAAVSN-FSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 356
            +C+   SK+A  +S+ +     DE ++   L K+GP+AV I+ V +  Y  G++   +C    L+H VL+VGYG          + PYWI KNSWG NWGENGY++     N CG+
Sbjct:  220 ACRLAPSKLAVRLSHCYQYDLRDERKLLELLYKNGPIAVAIDCVDIIDYRSGIAT--VCNDNGLNHAVLLVGYGIEN-------DTPYWIFKNSWGSNWGENGYFRARRNINACGM 326          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATW_HUMAN (Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.502e-15
Identity = 47/129 (36.43%), Postives = 67/129 (51.94%), Query Frame = 3
Query:   18 CKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGV--SCPYICGKYL-DHGVLIVGYGS-------------SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 356
            C   K +  A + +F ++ ++E ++A  L  +GP+ V IN   +Q Y  GV  + P  C   L DH VL+VG+GS             S   P      PYWI+KNSWG  WGE GY+++  G N CG+
Sbjct:  226 CHPKKYQKVAWIQDFIMLQNNEHRIAQYLATYGPITVTINMKPLQLYRKGVIKATPTTCDPQLVDHSVLLVGFGSVKSEEGIWAETVSSQSQPQPPHPTPYWILKNSWGAQWGEKGYFRLHRGSNTCGI 354          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.562e-15
Identity = 44/127 (34.65%), Postives = 65/127 (51.18%), Query Frame = 3
Query:   18 CKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGV--SCPYICGKYL-DHGVLIVGYGSS-----------GFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 356
            C   K    A + +F ++  +E ++A  L   GP+ V IN   ++ Y  GV  + P  C  +L DH VL+VG+G S           G  P   +  P+WI+KNSWG  WG  GY+++  G N CG+
Sbjct:  226 CLAKKRTKVAWIQDFIMLPDNEQKIAWYLATQGPITVTINMKLLKLYKKGVIEATPTSCDPFLVDHSVLLVGFGKSESVADRRAGAAGAQPQSRRSIPFWILKNSWGTKWGXGGYFRLYRGNNTCGI 352          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CYSP2_HOMAM (Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.370e-15
Identity = 48/125 (38.40%), Postives = 68/125 (54.40%), Query Frame = 3
Query:   12 GSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKH-GPLAVGINAVW--MQTYIGGVSCPYICG-KYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 371
            GSC+FD + +AA  S  + I+S  +      V+  GP++V I+A     Q Y  GV     C   YLDH VL VGYGS G        + +W++KNSW  +WG+ GY K+   R N CG+ ++ S
Sbjct:  202 GSCRFDSNSVAATCSGHTNIASGSETGLQQAVRDIGPISVTIDAAHSSFQFYSSGVYYEPSCSPSYLDHAVLAVGYGSEG-------GQDFWLVKNSWATSWGDAGYIKMSRNRNNNCGIATVAS 319          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.454e-15
Identity = 48/122 (39.34%), Postives = 65/122 (53.28%), Query Frame = 3
Query:   12 GSCKFDKSKIAAAVS---NFSVISSDEDQMAANLVKHGPLAVGINAVW-MQTYIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 356
            G CKF    I   V    N ++ + DE + A  LV+  P++V    V   + Y  GV     CG     ++H VL VGYG          + PYW+IKNSWG  WG+NGY+K+ MG+N+CGV
Sbjct:  236 GGCKFSAKNIGVQVRDSVNITLGAEDELKHAVGLVR--PVSVAFEVVHEFRFYKKGVFTSNTCGNTPMDVNHAVLAVGYGVED-------DVPYWLIKNSWGGEWGDNGYFKMEMGKNMCGV 348          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATQ_RAT (Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.271e-14
Identity = 42/121 (34.71%), Postives = 63/121 (52.07%), Query Frame = 3
Query:   12 GSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSM 365
            G C+++    +A ++ F V+   ED +   +   GP+A G++ +    + Y  GV     C  Y++H VL+VGYG  G          YW+IKNSWG+ WG  GY KI   R N C + S+
Sbjct:  220 GVCRYNPKNSSAKITGFVVLPESEDVLMDAVATKGPIATGVHVISSSFRFYQKGVYHEPKCSSYVNHAVLVVGYGFEGNET---DGNNYWLIKNSWGKRWGLRGYMKIAKDRNNHCAIASL 337          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.661e-14
Identity = 49/126 (38.89%), Postives = 66/126 (52.38%), Query Frame = 3
Query:   12 GSCKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPL--AVGINAVWMQTYIGGVSCPYICGKYLD---HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 371
            G CK+  SK  A V + + I+ +DE+ M   +  H P+  A  + A +M  Y  G+     C K  D   H VL VGYG         K  PYWI+KNSWG NWG  GY+ I  G+N+CG+ +  S
Sbjct:  212 GDCKYQPSKAIAFVKDVANITLNDEEAMVEAVALHNPVSFAFEVTADFMM-YRKGIYSSTSCHKTPDKVNHAVLAVGYGEE-------KGIPYWIVKNSWGPNWGMKGYFLIERGKNMCGLAACAS 329          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATV_NPVEP (Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.169e-14
Identity = 44/125 (35.20%), Postives = 66/125 (52.80%), Query Frame = 3
Query:   18 CKFDKSKIAAAVSNFS-VISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAIH 389
            C+ D +K    V   +  I+  E+++   L   GP+ V I+A  +  Y  G+   Y     L+H VL+VGYG            PYWI+KNSWG +WGE G++KI    N CG+ + ++S A I+
Sbjct:  207 CRMDPTKFVVGVKQCNRYITIYEEKLKDVLRLAGPIPVAIDASDILNYEQGI-IKYCANNGLNHAVLLVGYGVEN-------NVPYWILKNSWGTDWGEQGFFKIQQNVNACGIKNELASTAEIN 323          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.832e-14
Identity = 45/120 (37.50%), Postives = 63/120 (52.50%), Query Frame = 3
Query:   15 SCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWM--QTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDS 362
            SC+FD + I A  +    +   E+ +   +   GP++V I+A     Q Y  GV     C   +LDHGVL VGYG+          K YW++KNSWG +WG+ GY K+   R N CG+ S
Sbjct:  202 SCRFDANSIGAICTGSVEVQHTEEALQEAVSGVGPISVAIDASHFSFQFYSSGVYYEQNCSPTFLDHGVLAVGYGTES-------TKDYWLVKNSWGSSWGDAGYIKMSRNRDNNCGIAS 314          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.832e-14
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 3
Query:   18 CKFDKSKIAAAVSNFSVISSDEDQMAANLVKH-GPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAI 386
            C     K A  V N        ++   +L++H GP+A+ ++AV +  Y GGV   +     L+H VL+VGYG            PYW IKNSWG ++GENGY +I  G N CG+ + ++S A I
Sbjct:  221 CAVKPHKFAVGVRNCYRYVLLSEERLEDLLRHVGPIAIAVDAVDLTDYYGGV-ISFCENNGLNHAVLLVGYGIEN-------NVPYWTIKNSWGSDYGENGYVRIRRGVNSCGMINELASSAQI 336          
The following BLAST results are available for this feature:
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
CATV_NPVST8.805e-1638.79Viral cathepsin OS=Spodoptera litura multicapsid n... [more]
CATW_HUMAN1.502e-1536.43Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2[more]
CATW_FELCA2.562e-1534.65Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]
CYSP2_HOMAM4.370e-1538.40Digestive cysteine proteinase 2 OS=Homarus america... [more]
ALEUL_ARATH7.454e-1539.34Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
CATQ_RAT1.271e-1434.71Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1[more]
CATH_BOVIN1.661e-1438.89Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
CATV_NPVEP2.169e-1435.20Viral cathepsin OS=Epiphyas postvittana nucleopoly... [more]
CYSP3_HOMAM2.832e-1437.50Digestive cysteine proteinase 3 OS=Homarus america... [more]
CATV_NPVMC2.832e-1437.10Viral cathepsin OS=Mamestra configurata nucleopoly... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00483 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00483 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623392 ID=BQ623392; Name=BQ623392; organism=Citrus sinensis; type=EST; length=613bp
GGACCGACGGTGGTTCCTGCAAATTTGACAAAAGCAAAATTGCTGCAGCT
GTATCTAATTTCAGTGTTATTTCCTCTGATGAAGATCAAATGGCTGCAAA
TTTGGTGAAACATGGCCCTCTGGCAGTGGGTATCAATGCCGTTTGGATGC
AAACATATATTGGAGGAGTTTCATGCCCATACATTTGCGGGAAGTATTTG
GATCATGGAGTGCTTATCGTGGGCTATGGATCCTCAGGTTTCGCCCCGAT
CAGATTCAAGGAGAAGCCTTACTGGATCATAAAGAACTCCTGGGGAGAGA
ACTGGGGAGAGAATGGATATTATAAGATCTGCATGGGTCGCAATGTCTGT
GGGGTCGACTCCATGGTCTCATCTGTAGCTGCTATCCATACAACCTCAAG
CTAGACATTATGGAGGTTGTGCTAGGCAAGTGGAGCTTCTGTACCTAGAT
ATTATAGGATATCCTTTTAAATATCCGTCTGCAATTATAACGATGCCTAC
ATGCCTGGGCTGAGGCATGAACTTTCTATGCTCTTGTAATATTTAAGCAT
ATGTCATGTCAGAATGTAATATTTATCTATTTTATAGTTAAAAAAAAAAA
AAAAAAAAAAAAC
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