BQ623392

Overview
NameBQ623392
Unique NameBQ623392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.831e-14
Identity = 43/124 (34.68%), Postives = 68/124 (54.84%), Query Frame = 3
Query:   18 CKFDKSKIAAAVSN-FSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAI 386
            C     K A  V N +  +  +E+++   L   GP+A+ ++AV +  Y GG+   +     L+H VL+VGYG            PYWIIKNSWG ++GE+GY ++  G N CG+ + ++S A +
Sbjct:  221 CALKPHKFATGVRNCYRYVILNEERLEDLLRYVGPIAIAVDAVDLTDYYGGI-VSFCENNGLNHAVLLVGYGVEN-------NVPYWIIKNSWGSDYGEDGYVRVRRGVNSCGMINELASSAQV 336          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATC_MOUSE (Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.831e-14
Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = 3
Query:   78 DEDQMAANLVKHGPLAVG--INAVWMQTYIG-----GVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAI 386
            +E  M   LVKHGP+AV   ++  ++  + G     G+S P+   +  +H VL+VGYG      I      YWIIKNSWG NWGE+GY++I  G + C ++S+  +VAAI
Sbjct:  355 NEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGRDPVTGIE-----YWIIKNSWGSNWGESGYFRIRRGTDECAIESI--AVAAI 457          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATL_SARPE (Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 46/119 (38.66%), Postives = 64/119 (53.78%), Query Frame = 3
Query:   15 SCKFDKSKIAAAVSNF-SVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGV 356
            SC F+K+ I A  + F  +   DE++M   +   GP++V I+A     Q Y  GV     C +  LDHGVL+VGYG+            YW++KNSWG  WGE GY K+   + N CG+
Sbjct:  218 SCHFNKATIGATDTGFVDIPEGDEEKMKKAVATMGPVSVAIDASHESFQLYSEGVYNEPECDEQNLDHGVLVVGYGTDESG------MDYWLVKNSWGTTWGEQGYIKMARNQNNQCGI 330          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATL1_RAT (Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 47/124 (37.90%), Postives = 65/124 (52.42%), Query Frame = 3
Query:   12 GSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSC-PYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 371
            GSCK+      A  + F  I   E  +   +   GP++V ++A    +Q Y  G+   P    K LDHGVL+VGYG  G    + K   YW++KNSWG+ WG +GY KI   R N CG+ +  S
Sbjct:  209 GSCKYRAEYAVANDTGFVDIPQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKDLDHGVLVVGYGYEGTDSNKDK---YWLVKNSWGKEWGMDGYIKIAKDRNNHCGLATAAS 329          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.241e-14
Identity = 48/127 (37.80%), Postives = 68/127 (53.54%), Query Frame = 3
Query:   12 GSCKFDKSKIAAAVS---NFSVISSDEDQMAANLVKHGPLAVGINAV-WMQTYIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 371
            G CKF ++ I   V    N ++ +  E + A  LV+  P++V    V   + Y  GV     CG     ++H VL VGYG     P       YW+IKNSWG +WGE+GY+K+ MG+N+CGV +  S
Sbjct:  234 GICKFSQANIGVKVISSVNITLGAEYELKYAVALVR--PVSVAFEVVKGFKQYKSGVYASTECGDTPMDVNHAVLAVGYGVENGTP-------YWLIKNSWGADWGEDGYFKMEMGKNMCGVATCAS 351          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATL1_FELCA (Cathepsin L1 (Fragment) OS=Felis catus GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.241e-14
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 3
Query:    9 GGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR 341
            G SCK+      A V+++  I S E+++   L   GP++  I+A     + Y  G+     C    +DHGVL+VGYG+ G      + K YWIIKNSWG +WG +GY K+   R
Sbjct:   29 GDSCKYRPENSVANVTDYWDIPSKENELMITLAAVGPISAAIDASLDTFRFYKEGIYYDPSCSSEDVDHGVLVVGYGADG---TETENKKYWIIKNSWGTDWGMDGYIKMAKDR 139          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATV_NPVHC (Viral cathepsin OS=Hyphantria cunea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.076e-13
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 3
Query:   12 GSCKFDKSKIAAAVSN-FSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAIH 389
            G+C+ D +K    V   +  I+  E+++   L   GP+ V I+A  +  Y  G+     C  Y  +H VL+VGYG            PYWI+KN+WGE+WGE GY+++    N CG+ + + + A I+
Sbjct:  206 GNCRVDVAKFVVKVKKCYRYIAVFEEKLKDLLRIVGPIPVAIDASDIVNYRRGIM--RYCSNYGFNHAVLLVGYGVEN-------NVPYWILKNTWGEDWGEQGYFRVQQNINACGIRNELLASAEIY 324          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATR_MOUSE (Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.406e-13
Identity = 43/121 (35.54%), Postives = 62/121 (51.24%), Query Frame = 3
Query:   12 GSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDS 362
            G C+++     A ++ F  +   ED + A +   GP+  GI+A     + Y GG+     C    + HGVL+VGYG  G   I      YW+IKNSWG+ WG  GY K+   + N CG+ S
Sbjct:  210 GPCRYNPKNSKAEITGFVSLPQSEDILMAAVATIGPITAGIDASHESFKNYKGGIYHEPNCSSDTVTHGVLVVGYGFKG---IETDGNHYWLIKNSWGKRWGIRGYMKLAKDKNNHCGIAS 327          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATL1_MOUSE (Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.406e-13
Identity = 47/124 (37.90%), Postives = 63/124 (50.81%), Query Frame = 3
Query:   12 GSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSC-PYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 371
            GSCK+      A  + F  I   E  +   +   GP++V ++A    +Q Y  G+   P    K LDHGVL+VGYG  G    + K   YW++KNSWG  WG  GY KI   R N CG+ +  S
Sbjct:  209 GSCKYRAEFAVANDTGFVDIPQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLDHGVLLVGYGYEGTDSNKNK---YWLVKNSWGSEWGMEGYIKIAKDRDNHCGLATAAS 329          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.836e-13
Identity = 46/127 (36.22%), Postives = 66/127 (51.97%), Query Frame = 3
Query:   12 GSCKFDKSKIAAAVS---NFSVISSDEDQMAANLVKHGPLAVGINAVW-MQTYIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 371
            G CKF    +   V    N ++ + DE + A  LV+  P++V    +   + Y  GV     CG     ++H VL VGYG     P       YW+IKNSWG +WG+ GY+K+ MG+N+CGV +  S
Sbjct:  238 GICKFKNENVGVKVLDSVNITLGAEDELKDAVGLVR--PVSVAFEVITGFRLYKSGVYTSDHCGTTPMDVNHAVLAVGYGVEDGVP-------YWLIKNSWGADWGDEGYFKMEMGKNMCGVATCAS 355          
The following BLAST results are available for this feature:
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
CATV_NPVSE4.831e-1434.68Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATC_MOUSE4.831e-1440.91Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=... [more]
CATL_SARPE6.310e-1438.66Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1[more]
CATL1_RAT6.310e-1437.90Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV... [more]
CYSP3_SOLLC8.241e-1437.80Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CATL1_FELCA8.241e-1437.72Cathepsin L1 (Fragment) OS=Felis catus GN=CTSL1 PE... [more]
CATV_NPVHC1.076e-1333.59Viral cathepsin OS=Hyphantria cunea nuclear polyhe... [more]
CATR_MOUSE1.406e-1335.54Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1[more]
CATL1_MOUSE1.406e-1337.90Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2[more]
CYSP2_MAIZE1.836e-1336.22Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00483 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00483 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623392 ID=BQ623392; Name=BQ623392; organism=Citrus sinensis; type=EST; length=613bp
GGACCGACGGTGGTTCCTGCAAATTTGACAAAAGCAAAATTGCTGCAGCT
GTATCTAATTTCAGTGTTATTTCCTCTGATGAAGATCAAATGGCTGCAAA
TTTGGTGAAACATGGCCCTCTGGCAGTGGGTATCAATGCCGTTTGGATGC
AAACATATATTGGAGGAGTTTCATGCCCATACATTTGCGGGAAGTATTTG
GATCATGGAGTGCTTATCGTGGGCTATGGATCCTCAGGTTTCGCCCCGAT
CAGATTCAAGGAGAAGCCTTACTGGATCATAAAGAACTCCTGGGGAGAGA
ACTGGGGAGAGAATGGATATTATAAGATCTGCATGGGTCGCAATGTCTGT
GGGGTCGACTCCATGGTCTCATCTGTAGCTGCTATCCATACAACCTCAAG
CTAGACATTATGGAGGTTGTGCTAGGCAAGTGGAGCTTCTGTACCTAGAT
ATTATAGGATATCCTTTTAAATATCCGTCTGCAATTATAACGATGCCTAC
ATGCCTGGGCTGAGGCATGAACTTTCTATGCTCTTGTAATATTTAAGCAT
ATGTCATGTCAGAATGTAATATTTATCTATTTTATAGTTAAAAAAAAAAA
AAAAAAAAAAAAC
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