BQ623392

Overview
NameBQ623392
Unique NameBQ623392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7034 contig Csv1_Contig7034:820..1432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.836e-13
Identity = 49/132 (37.12%), Postives = 68/132 (51.52%), Query Frame = 3
Query:    6 DGGSCKFDKSKIAAAVS--NFSVISSDEDQMAANLVKHGPLAVGINAVWM--QTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNV------CGVDSMVS 371
            D G C  DK+     V+   +  +  D+++     V H P++V I A     Q Y  GV     CG  LDHGV++VGYGS+         + YWII+NSWG NWG++GY K  + RN+      CG+  M S
Sbjct:  224 DLGLCNADKNNNTRVVTIDGYEDVPRDDEKSLKKAVAHQPVSVAIEASSQAFQLYKSGVMTG-TCGISLDHGVVVVGYGSTS-------GEDYWIIRNSWGLNWGDSGYVK--LQRNIDDPFGKCGIAMMPS 345          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.836e-13
Identity = 41/125 (32.80%), Postives = 70/125 (56.00%), Query Frame = 3
Query:   12 GSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAI 386
            G CK    +++ + S   V+ + E+++   LV +GP++V I+   +  Y  G++      + L+H VL+VGYG          + PYWI+KNSWG  WGE GY+++   +N CG+ +  +S A +
Sbjct:  217 GVCKKSPFELSISGSRRYVLQN-ENKLRELLVVNGPISVAIDVSDLINYKAGIADICENNEGLNHAVLLVGYGVKN-------DVPYWILKNSWGAEWGEEGYFRVQRDKNSCGMMNEYASSAIL 333          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATS_CANFA (Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 42/124 (33.87%), Postives = 66/124 (53.23%), Query Frame = 3
Query:   12 GSCKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPLAVGINAVWMQTYI--GGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 371
            G C++D  K AA  S ++ +    ED +   +   GP++V I+A     ++   GV     C + ++HGVL+VGYG+          K YW++KNSWG N+G+ GY ++     N CG+ S  S
Sbjct:  211 GKCRYDSKKRAATCSKYTELPFGSEDALKEAVANKGPVSVAIDASHYSFFLYRSGVYYEPSCTQNVNHGVLVVGYGN-------LNGKDYWLVKNSWGLNFGDQGYIRMARNSGNHCGIASYPS 327          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 45/125 (36.00%), Postives = 59/125 (47.20%), Query Frame = 3
Query:   12 GSCKFDKSKIAAAVSNF-SVISSDEDQMAANLVKHGPLAVGINAVW-MQTYIGGVSCPYICGKYLD---HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 371
            G CKF+  K  A V N  ++  +DE  M   +  + P++           Y  GV     C K  D   H VL VGYG             YWI+KNSWG NWG NGY+ I  G+N+CG+ +  S
Sbjct:  210 GQCKFNPEKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYGEQNGLL-------YWIVKNSWGSNWGNNGYFLIERGKNMCGLAACAS 327          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CYSP2_DICDI (Cysteine proteinase 2 OS=Dictyostelium discoideum GN=cprB PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.132e-13
Identity = 50/155 (32.26%), Postives = 69/155 (44.52%), Query Frame = 3
Query:    9 GGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICG-KYLDHGVLIVGYGSSG------------------------------FAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 371
            G +C F+KS I A +  +  I++  +    N  +HGP++V I+A     Q Y  G+     C    LDHGVL+VGYG  G                                 +R K   YWI+KNSWG +WG  GY  +   R N CG+ S+ S
Sbjct:  218 GSTCLFNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSS 372          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.132e-13
Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = 3
Query:   15 SCKFDKSKIAAAVSNFSVI-SSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGV-SCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 371
            SC F+K  + A    F+ I   DE +MA  +   GP++V I+A     Q Y  GV + P    + LDHGVL+VG+G+          + YW++KNSWG  WG+ G+ K+   + N CG+ S  S
Sbjct:  250 SCHFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESG------EDYWLVKNSWGTTWGDKGFIKMLRNKENQCGIASASS 367          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.132e-13
Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = 3
Query:   15 SCKFDKSKIAAAVSN---FSVISSDEDQMAANLVKHGPLAVGINAVW-MQTYIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 371
            +CKF    +   V N    ++ + DE + A  LV+  P+++    +   + Y  GV     CG     ++H VL VGYG     P       YW+IKNSWG +WG+ GY+K+ MG+N+CG+ +  S
Sbjct:  237 TCKFSAENVGVQVLNSVNITLGAEDELKHAVGLVR--PVSIAFEVIHSFRLYKSGVYTDSHCGSTPMDVNHAVLAVGYGVEDGVP-------YWLIKNSWGADWGDKGYFKMEMGKNMCGIATCAS 353          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.090e-13
Identity = 43/125 (34.40%), Postives = 64/125 (51.20%), Query Frame = 3
Query:    9 GGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG-RNVCGVDSMVS 371
            G  C++     AA V +F  I   E+ +   + K GP++V ++A     Q Y  G+     C + +L+H VL+VGYG  G          YW++KNSWGE WG  GY KI     N CG+ ++ +
Sbjct:  208 GRKCRYHAENSAANVRDFVQIPGREEALMKAVAKVGPISVAVDASHDSFQFYDSGIYYEPQCKRVHLNHAVLVVGYGFEGEES---DGNSYWLVKNSWGEEWGMKGYIKIAKDWNNHCGIATLAT 329          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.090e-13
Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = 3
Query:   12 GSCKFDKSKIAAAVS---NFSVISSDEDQMAANLVKHGPLAVGINAV-WMQTYIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 371
            G C +    +   V    N ++ + DE + A  LV+  P++V    +   + Y  GV     CG     ++H VL VGYG     P       YW+IKNSWG +WG+NGY+K+ MG+N+CG+ +  S
Sbjct:  240 GICHYKPENVGVKVLDSVNITLGAEDELKNAVGLVR--PVSVAFQVINGFRMYKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGVP-------YWLIKNSWGADWGDNGYFKMEMGKNMCGIATCAS 357          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.090e-13
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = 3
Query:   18 CKFDKSKIAAAVSN-FSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 356
            C  D  KIA  +++ F     DE+++   +   GP+A+ ++A+ +  Y  G+     C  Y L+H VL++G+G            PYWIIKNSWGE+WGENG+ ++    N CG+
Sbjct:  251 CTLDNRKIAVKLNSCFKYDIRDENKLKELVYTTGPVAIAVDAMDIINYRRGILNQ--CHIYDLNHAVLLIGWGIEN-------NVPYWIIKNSWGEDWGENGFLRVRRNVNACGL 356          
The following BLAST results are available for this feature:
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
CPR1_ARATH1.836e-1337.12Probable cysteine proteinase At3g19400 OS=Arabidop... [more]
CATV_GVCP1.836e-1332.80Viral cathepsin OS=Cydia pomonella granulosis viru... [more]
CATS_CANFA2.398e-1333.87Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1[more]
CATH_RAT2.398e-1336.00Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CYSP2_DICDI3.132e-1332.26Cysteine proteinase 2 OS=Dictyostelium discoideum ... [more]
CATL_DROME3.132e-1337.10Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]
ALEU_ARATH3.132e-1334.13Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
TEST2_MOUSE4.090e-1334.40Testin-2 OS=Mus musculus PE=2 SV=1[more]
ORYC_ORYSJ4.090e-1334.65Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CATV_NPVHZ4.090e-1335.65Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00483 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00483 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623392 ID=BQ623392; Name=BQ623392; organism=Citrus sinensis; type=EST; length=613bp
GGACCGACGGTGGTTCCTGCAAATTTGACAAAAGCAAAATTGCTGCAGCT
GTATCTAATTTCAGTGTTATTTCCTCTGATGAAGATCAAATGGCTGCAAA
TTTGGTGAAACATGGCCCTCTGGCAGTGGGTATCAATGCCGTTTGGATGC
AAACATATATTGGAGGAGTTTCATGCCCATACATTTGCGGGAAGTATTTG
GATCATGGAGTGCTTATCGTGGGCTATGGATCCTCAGGTTTCGCCCCGAT
CAGATTCAAGGAGAAGCCTTACTGGATCATAAAGAACTCCTGGGGAGAGA
ACTGGGGAGAGAATGGATATTATAAGATCTGCATGGGTCGCAATGTCTGT
GGGGTCGACTCCATGGTCTCATCTGTAGCTGCTATCCATACAACCTCAAG
CTAGACATTATGGAGGTTGTGCTAGGCAAGTGGAGCTTCTGTACCTAGAT
ATTATAGGATATCCTTTTAAATATCCGTCTGCAATTATAACGATGCCTAC
ATGCCTGGGCTGAGGCATGAACTTTCTATGCTCTTGTAATATTTAAGCAT
ATGTCATGTCAGAATGTAATATTTATCTATTTTATAGTTAAAAAAAAAAA
AAAAAAAAAAAAC
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