BQ623392

Overview
NameBQ623392
Unique NameBQ623392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7034 contig Csv1_Contig7034:820..1432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATL2_BOVIN (Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.342e-13
Identity = 48/127 (37.80%), Postives = 63/127 (49.61%), Query Frame = 3
Query:    3 TDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSCPYICG-KYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 371
            TD  SC +     AA  + F  I   E  +   +   GP++V I+A     Q Y  G+     C  K LDHGVL+VGYG  G      K   +WI+KNSWG  WG NGY K+   + N CG+ +  S
Sbjct:  207 TDTNSCNYKPECSAANDTGFVDIPQREKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNNNK---FWIVKNSWGPEWGWNGYVKMAKDQNNHCGIATAAS 330          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATL1_BOVIN (Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 5.342e-13
Identity = 48/127 (37.80%), Postives = 63/127 (49.61%), Query Frame = 3
Query:    3 TDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSCPYICG-KYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 371
            TD  SC +     AA  + F  I   E  +   +   GP++V I+A     Q Y  G+     C  K LDHGVL+VGYG  G      K   +WI+KNSWG  WG NGY K+   + N CG+ +  S
Sbjct:  207 TDTNSCNYKPECSAANDTGFVDIPQREKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNNNK---FWIVKNSWGPEWGWNGYVKMAKDQNNHCGIATAAS 330          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.342e-13
Identity = 42/124 (33.87%), Postives = 65/124 (52.42%), Query Frame = 3
Query:   12 GSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG-RNVCGVDSMVS 371
            G C++     +A ++++  +  +E  +   +   GP++  I+A     + Y GG+     C  Y ++H VL+VGYGS G          YW+IKNSWGE WG NGY +I     N CG+ S+ S
Sbjct:  209 GPCRYRSENASANITDYVNLPPNELYLWVAVASIGPVSAAIDASHDSFRFYNGGIYYEPNCSSYFVNHAVLVVGYGSEGDVK---DGNNYWLIKNSWGEEWGMNGYMQIAKDHNNHCGIASLAS 329          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATV_NPVLD (Viral cathepsin OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.976e-13
Identity = 40/127 (31.50%), Postives = 68/127 (53.54%), Query Frame = 3
Query:   18 CKFDKSK--IAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGV--SCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAI 386
            C  D+ +  + + V  +  +  +E+++   L   GP+ + I+A  +  Y  GV  SC       L+H VL+VGYG     P       YW+ KN+WG++WGENGY+++    N CG+ + ++S A +
Sbjct:  239 CGLDRHRPYVVSLVGCYRYVMVNEEKLKDLLRAVGPIPMAIDAADIVNYYRGVISSCE---NNGLNHAVLLVGYGVENGVP-------YWVFKNTWGDDWGENGYFRVRQNVNACGMVNDLASTAVL 355          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATL2_HUMAN (Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.976e-13
Identity = 44/123 (35.77%), Postives = 63/123 (51.22%), Query Frame = 3
Query:   18 CKFDKSKIAAAVSNFSVISSDEDQMAANLVKH-GPLAVGINAVW--MQTYIGGVSCPYICG-KYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 371
            CK+      A  + F+V++  +++     V   GP++V ++A     Q Y  G+     C  K LDHGVL+VGYG  G          YW++KNSWG  WG NGY KI   + N CG+ +  S
Sbjct:  211 CKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEG---ANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAAS 330          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.976e-13
Identity = 44/124 (35.48%), Postives = 63/124 (50.81%), Query Frame = 3
Query:   12 GSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYL-DHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 371
            G C++     +A ++ F  +  +E  +   +   GP++  I+A     + Y GGV     C  Y+ +H VL+VGYG  G          YW+IKNSWGE WG NG+ KI   R N CG+ S  S
Sbjct:  209 GPCRYHSENASANITGFVNLPPNELYLWVAVASIGPVSAAIDASHDSFRFYSGGVYHEPNCSSYVVNHAVLVVGYGFEGNET---DGNNYWLIKNSWGEEWGINGFMKIAKDRNNHCGIASQAS 329          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.112e-13
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = 3
Query:   18 CKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 371
            CKF +  +AA ++++  I + ++    N +   P++V I+A     Q Y  GV     C    LDHGVL VG G+          + Y+I+KNSWG +WG NGY  +   + N CG+ +M S
Sbjct:  219 CKFQEGSVAAKITSYKEIEAGDENDLQNALLLNPVSVAIDASHNSFQLYTAGVYYEPACSSEDLDHGVLAVGMGTDN-------GEDYYIVKNSWGPSWGLNGYIHMARNKDNNCGISTMAS 333          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATV_NPVCF (Viral cathepsin OS=Choristoneura fumiferana nuclear polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.112e-13
Identity = 40/129 (31.01%), Postives = 66/129 (51.16%), Query Frame = 3
Query:    6 DGGSCKFDKSKIAAAVSN-FSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAIH 389
            + G C+ + +K    V   +  I+  E+++   L   GP+ V I+A  +  Y  G+   Y     L+H VL+VGY      P       +WI+KN+WG +WGE GY+++    N CG+ + + S A I+
Sbjct:  204 NNGDCRANAAKFVVKVKKCYRYITVFEEKLKDLLRSVGPIPVAIDASDIVNYKRGIM-KYCANHGLNHAVLLVGYAVENGVP-------FWILKNTWGADWGEQGYFRVQQNINACGIQNELPSSAEIY 324          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATV_NPVAC (Viral cathepsin OS=Autographa californica nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.112e-13
Identity = 39/129 (30.23%), Postives = 68/129 (52.71%), Query Frame = 3
Query:    6 DGGSCKFDKSKIAAAVSN-FSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAIH 389
            D  +C+ + +K    V + +  I+  E+++   L   GP+ + I+A  +  Y  G+   Y     L+H VL+VGYG            PYW  KN+WG +WGE+G++++    N CG+ + ++S A I+
Sbjct:  203 DNNNCRMNSNKFLVQVKDCYRYITVYEEKLKDLLRLVGPIPMAIDAADIVNYKQGI-IKYCFNSGLNHAVLLVGYGVEN-------NIPYWTFKNTWGTDWGEDGFFRVQQNINACGMRNELASTAVIY 323          
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 9.112e-13
Identity = 41/122 (33.61%), Postives = 65/122 (53.28%), Query Frame = 3
Query:   18 CKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPLAVGINAVWMQTYI--GGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 371
            C++D    AA  S ++ +    ED +   +   GP++VG++A     ++   GV     C + ++HGVL+VGYG           K YW++KNSWG N+GE GY ++   + N CG+ S  S
Sbjct:  213 CQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD-------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 327          
The following BLAST results are available for this feature:
BLAST of BQ623392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
CATL2_BOVIN5.342e-1337.80Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1[more]
CATL1_BOVIN5.342e-1337.80Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3[more]
CATJ_MOUSE5.342e-1333.87Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]
CATV_NPVLD6.976e-1331.50Viral cathepsin OS=Lymantria dispar multicapsid nu... [more]
CATL2_HUMAN6.976e-1335.77Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2[more]
CATJ_RAT6.976e-1335.48Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
CYSP3_DICDI9.112e-1334.43Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]
CATV_NPVCF9.112e-1331.01Viral cathepsin OS=Choristoneura fumiferana nuclea... [more]
CATV_NPVAC9.112e-1330.23Viral cathepsin OS=Autographa californica nuclear ... [more]
CATS_HUMAN9.112e-1333.61Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00483 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00483 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623392 ID=BQ623392; Name=BQ623392; organism=Citrus sinensis; type=EST; length=613bp
GGACCGACGGTGGTTCCTGCAAATTTGACAAAAGCAAAATTGCTGCAGCT
GTATCTAATTTCAGTGTTATTTCCTCTGATGAAGATCAAATGGCTGCAAA
TTTGGTGAAACATGGCCCTCTGGCAGTGGGTATCAATGCCGTTTGGATGC
AAACATATATTGGAGGAGTTTCATGCCCATACATTTGCGGGAAGTATTTG
GATCATGGAGTGCTTATCGTGGGCTATGGATCCTCAGGTTTCGCCCCGAT
CAGATTCAAGGAGAAGCCTTACTGGATCATAAAGAACTCCTGGGGAGAGA
ACTGGGGAGAGAATGGATATTATAAGATCTGCATGGGTCGCAATGTCTGT
GGGGTCGACTCCATGGTCTCATCTGTAGCTGCTATCCATACAACCTCAAG
CTAGACATTATGGAGGTTGTGCTAGGCAAGTGGAGCTTCTGTACCTAGAT
ATTATAGGATATCCTTTTAAATATCCGTCTGCAATTATAACGATGCCTAC
ATGCCTGGGCTGAGGCATGAACTTTCTATGCTCTTGTAATATTTAAGCAT
ATGTCATGTCAGAATGTAATATTTATCTATTTTATAGTTAAAAAAAAAAA
AAAAAAAAAAAAC
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