BQ623399

Overview
NameBQ623399
Unique NameBQ623399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:98..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF8_ORYSJ (Putative actin-depolymerizing factor 8 OS=Oryza sativa subsp. japonica GN=ADF8 PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.350e-31
Identity = 59/126 (46.83%), Postives = 95/126 (75.40%), Query Frame = 3
Query:  135 VHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            V +  K  F EL  ++ +R+++FKI++++++++VEK G P ++Y+DF ASLPA+    AVYD DFV+ +NC+KS+IFFI+WSP  + +R+K IYA  +++F+ ELDG+  E+QATDP +M L+V +
Sbjct:   19 VPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASLPAD----AVYDLDFVSDDNCRKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLR 140          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ACTP_ACACA (Actophorin OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.350e-31
Identity = 62/127 (48.82%), Postives = 90/127 (70.87%), Query Frame = 3
Query:  123 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 503
            SG+AV DDC  KF ELK    +R++ FK+     +V+VE +G P  TYEDF + LP  +CRYA++DY+F   +  Q+++I FI W+PD+A ++SKM+Y S+KD  K++L GIQVE+QATD +E+  D
Sbjct:    2 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEF-QVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISED 127          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COFI_YARLI (Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.502e-26
Identity = 58/128 (45.31%), Postives = 86/128 (67.19%), Query Frame = 3
Query:  123 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 503
            SG+AV+D     F ELK  +   FI++KI + + +++VE+ G  T +Y+ F   LP  +CRYAVYD+++ +++   ++S++ F  WSPDTA VRSKMIYASSKD  +R L GI  E+Q TD SE+  +
Sbjct:   14 SGVAVNDSALQAFNELKLGKKVTFIIYKINDAKTEIVVEEEGT-TDSYDTFLGKLPENDCRYAVYDFEYEISSGEGKRSKLVFFTWSPDTAPVRSKMIYASSKDSLRRALTGISTEIQGTDFSEVAYE 140          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COFI_USTMA (Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.566e-25
Identity = 50/128 (39.06%), Postives = 85/128 (66.41%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 503
            +SG+ V  +C  KF ELK  +  ++I++ + +K  +++V+     T +Y+DF A LP  ECRYA+YD+++   +  ++++I F +WSPD A+++ KM++ASSKD  ++ L GI  E+Q TD SE+  D
Sbjct:    2 SSGVKVSQECLDKFQELKLGKKIKYIIYSLNDKNTEIVVQNTSTST-SYDDFLAELPPTECRYAIYDFEYEKGDAGKRNKICFFSWSPDDAKIKPKMVFASSKDALRKALVGISTEIQGTDFSEVSYD 128          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COFI_DEBHA (Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.147e-23
Identity = 51/128 (39.84%), Postives = 85/128 (66.41%), Query Frame = 3
Query:  123 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 503
            SG+AV D+    F +LK  + Y+FI+F + +++ +++VE+    +  Y+ F   LP  EC+YA+YD+++ +     ++S+I F  WSPDTA ++SKMIYASSKD  +R L+G+  ++Q TD SE+  +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFIIFALNDQKTEIVVEETSNNSD-YDAFLEKLPENECKYAIYDFEYEIGGGEGKRSKIVFFTWSPDTAPIKSKMIYASSKDALRRALNGVSSDVQGTDFSEVAYE 130          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COFI_SCHPO (Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.498e-23
Identity = 51/127 (40.16%), Postives = 84/127 (66.14%), Query Frame = 3
Query:  123 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 503
            SG+ V  +C   F ELK  ++ R++VFK+ + + +++VEK     + ++ F   LP ++CRYA+YD++F   E   +++I FI+WSPD A ++SKM+Y+SSKD  +R   GI  ++QATD SE+  +
Sbjct:    4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTD-KDFDTFLGDLPEKDCRYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYE 128          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COFI_ZYGRO (Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.338e-23
Identity = 54/128 (42.19%), Postives = 82/128 (64.06%), Query Frame = 3
Query:  123 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN-CQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 503
            SG++V D+    F +LK  + Y+F+++ I E  K  IV K    +Q+Y++F   LP  +C YA+YD+++    N  ++S+I F  WSPDTA VRSKM+YASSKD  +R L G+  ++Q TD SE+  +
Sbjct:    4 SGVSVADESLQAFNDLKLGKKYKFVLYGISE-DKTTIVVKETSTSQSYDEFLGKLPENDCLYAIYDFEYEIGGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALTGVSSDIQGTDFSEVSFE 130          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COFI_YEAST (Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.338e-23
Identity = 51/128 (39.84%), Postives = 83/128 (64.84%), Query Frame = 3
Query:  123 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 503
            SG+AV D+    F +LK  + Y+FI+F + + + +++V++      +Y+ F   LP  +C YA+YD+++ +     ++S+I F  WSPDTA VRSKM+YASSKD  +R L+G+  ++Q TD SE+  D
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDP-SYDAFLEKLPENDCLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYD 130          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COFI_CANGA (Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.338e-23
Identity = 52/128 (40.62%), Postives = 84/128 (65.62%), Query Frame = 3
Query:  123 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN-CQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 503
            SG+AV D+    F +LK    Y+F++F + + + +++V++      +Y+ F   LP  +C YAVYD+++  +E+  ++S+I F  WSPDTA VR KM+YASSKD  KR L+G+ +E+Q TD SE+  +
Sbjct:    4 SGVAVADESIQAFNDLKLGMKYKFVLFSLNDAKTEIVVKETSSDP-SYDAFLEKLPENDCLYAVYDFEYQISESEGKRSKIVFFTWSPDTASVRPKMVYASSKDALKRALNGVAIEIQGTDFSEVSYE 130          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF1_DICDI (Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.338e-23
Identity = 54/134 (40.30%), Postives = 80/134 (59.70%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKRPC 521
            +SG+A+  +C   F +LK  R Y  I+++I +  K++IV+       ++++F   LP  ECRY V DY +   E  QKS+I F+AW PDTA ++ KM+  SSKD  ++   GIQVE+Q TD SE+    F   C
Sbjct:    2 SSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKEIIVDSTLPAGCSFDEFTKCLPENECRYVVLDYQY-KEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTDASEVKDSCFYEKC 134          
The following BLAST results are available for this feature:
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ADF8_ORYSJ4.350e-3146.83Putative actin-depolymerizing factor 8 OS=Oryza sa... [more]
ACTP_ACACA4.350e-3148.82Actophorin OS=Acanthamoeba castellanii PE=1 SV=2[more]
COFI_YARLI5.502e-2645.31Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1[more]
COFI_USTMA3.566e-2539.06Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1[more]
COFI_DEBHA1.147e-2339.84Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1[more]
COFI_SCHPO1.498e-2340.16Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 ... [more]
COFI_ZYGRO3.338e-2342.19Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 S... [more]
COFI_YEAST3.338e-2339.84Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 S... [more]
COFI_CANGA3.338e-2340.63Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1[more]
COF1_DICDI3.338e-2340.30Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00490 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00490 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623399 ID=BQ623399; Name=BQ623399; organism=Citrus sinensis; type=EST; length=613bp
GAAGAGAGTCCTTCATTATCTTAACCTCCATTTCCTCTCCAACAAACTTT
CCTTCACCTTGCAAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCT
AGAAACCATGGCTAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTA
AGCTAAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTA
TTTAAGATTGAGGAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGA
GCCAACTCAAACCTATGAAGATTTTGCTGCCAGCCTTCCTGCTGAGGAGT
GCCGATATGCTGTGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAA
AAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACACTGCAAGAGTAAG
AAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAGCTAG
ATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTT
GACGTATTTAAAAGACCGTGCCCACTAAATAAAGGCTTCTGATCTCAGCA
ATTGAGATTGGTTTTATCTTTGTGCTTTACCTAAGGGGAAATGGTAATAG
TTTGTGGCGGCAG
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