BQ623399

Overview
NameBQ623399
Unique NameBQ623399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:98..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COFI_KLULA (Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.360e-23
Identity = 53/128 (41.41%), Postives = 83/128 (64.84%), Query Frame = 3
Query:  123 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN-CQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 503
            SG+AV D+    F +LK  + Y+FI++ + + + ++IV++     Q Y+ F   LP  +C YAVYD+++    N  ++S+I F  WSPDTA VRSKM+YASSKD  +R L+G+  ++Q TD SE+  +
Sbjct:    4 SGVAVADESLNAFNDLKLGKKYKFILYALNDSKTEIIVKETSAE-QDYDKFLEQLPENDCLYAVYDFEYELGNNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYE 130          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COFI_PICAN (Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.657e-22
Identity = 50/128 (39.06%), Postives = 83/128 (64.84%), Query Frame = 3
Query:  123 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAE-NCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 503
            SG+AV D+    F +LK  + ++ I++K+ + + +++V+        Y+ F   LP  +CRYAVYD+++   + + ++++I F  WSPDTA VR+KM+YASSKD  +R L+GI  E+Q TD SE+  +
Sbjct:    4 SGVAVSDEALKAFNDLKLGKKFKSIIYKLNDAKTEIVVDSTSTE-DAYDAFVEDLPENDCRYAVYDFEYEVGQGDGKRNKIVFYQWSPDTASVRAKMVYASSKDALRRALNGIGTEIQGTDFSEVAYE 130          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COFI_CRYNE (Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.826e-22
Identity = 51/129 (39.53%), Postives = 84/129 (65.12%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 503
            +SG+    +C  KF ELK  +   ++++ + E ++ ++V K  E  + ++ F A LP ++CR+AVYD++F +      ++++ FI WSPD A V++KMI+ASSK+  +R LDGI  E+QATD SE+  D
Sbjct:    2 SSGVQPTQECLEKFQELKTGKKLTYVIYGLSEDKRSIVVLKASED-KDFDSFVAELPEKDCRWAVYDFEFTLPGGEGVRNKLCFIVWSPDDASVKNKMIFASSKEAIRRRLDGIHTEIQATDFSEITKD 129          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COFI_ASHGO (Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.826e-22
Identity = 50/128 (39.06%), Postives = 83/128 (64.84%), Query Frame = 3
Query:  123 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 503
            SG+AV D+    F +LK  + Y+F++F +   +  +IV++     + Y+ F   LP ++C YAVYD+++ ++    ++S+I F  WSPDTA +RSKM+YASSKD  +R L+G+  ++Q TD SE+  +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFVLFGLNADKTSIIVKETSNE-RDYDVFLEKLPEDDCLYAVYDFEYEISGAEGKRSKIVFFTWSPDTAPIRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYE 130          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: CADF_DROME (Cofilin/actin-depolymerizing factor homolog OS=Drosophila melanogaster GN=tsr PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.090e-21
Identity = 49/132 (37.12%), Postives = 84/132 (63.64%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPA---EECRYAVYDYDFV-----TAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSE 491
            ASG+ V D CK  + E+K  + +R+++F I + +KQ+ VE + +    Y+ F   +      ECRY ++D++++     T+E+ +K ++F ++W PDTA+V+ KM+Y+SS D  K+ L G+Q  +QATD SE
Sbjct:    2 ASGVTVSDVCKTTYEEIKKDKKHRYVIFYIRD-EKQIDVETVADRNAEYDQFLEDIQKCGPGECRYGLFDFEYMHQCQGTSESSKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSE 132          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COFI_GIBZE (Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.819e-19
Identity = 52/132 (39.39%), Postives = 78/132 (59.09%), Query Frame = 3
Query:  144 DCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEEC-----------RYAVYDYDFVTAENCQ-KSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 503
            DC   F +LK  + Y+FIV+K+ +  K+++++K  E ++ +EDF  +L                RYAVYD+++  A     +++I FIAWSPD A ++ KMIYASSK+  KR L GI  ELQA D  ++  D
Sbjct:    2 DCITAFNDLKLNKKYKFIVYKLSDDYKEIVIDKASE-SRDWEDFRETLVNATAKSRTGAVGKGPRYAVYDFEYNLASGDGIRNKITFIAWSPDDAGIQPKMIYASSKEALKRSLTGIATELQANDTDDIEYD 132          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF1_RAT (Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 7.964e-17
Identity = 53/137 (38.69%), Postives = 83/137 (60.58%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 476
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF1_HUMAN (Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 7.964e-17
Identity = 53/137 (38.69%), Postives = 83/137 (60.58%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 476
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF1_MOUSE (Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.040e-16
Identity = 53/137 (38.69%), Postives = 82/137 (59.85%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 476
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P+ A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPENAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: CADF2_PLAFX (Cofilin/actin-depolymerizing factor homolog 2 OS=Plasmodium falciparum (isolate HB3) PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.040e-16
Identity = 47/125 (37.60%), Postives = 77/125 (61.60%), Query Frame = 3
Query:  123 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPT--QTYEDFAA----SLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQAT 479
            SG+ V D+C  +F +LK K  +++I+++IE  + +VIV+ L +    ++Y+D       +L   ECRY + D    T E   ++RI+FI WSPD A+ + KM+YASSK+   R+++GI   L+ T
Sbjct:    3 SGVKVSDECVYEFNKLKIKHIHKYIIYRIENYE-EVIVDFLEQDNSLKSYKDIIIDIRNNLKTTECRYIIADMPIPTPEGVLRNRIYFIFWSPDLAKSKEKMLYASSKEYLVRKINGIFKSLEIT 126          
The following BLAST results are available for this feature:
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
COFI_KLULA4.360e-2341.41Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1[more]
COFI_PICAN1.657e-2239.06Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1[more]
COFI_CRYNE2.826e-2239.53Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV... [more]
COFI_ASHGO2.826e-2239.06Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1[more]
CADF_DROME9.090e-2137.12Cofilin/actin-depolymerizing factor homolog OS=Dro... [more]
COFI_GIBZE3.819e-1939.39Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1[more]
COF1_RAT7.964e-1738.69Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3[more]
COF1_HUMAN7.964e-1738.69Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3[more]
COF1_MOUSE1.040e-1638.69Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3[more]
CADF2_PLAFX1.040e-1637.60Cofilin/actin-depolymerizing factor homolog 2 OS=P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00490 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00490 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623399 ID=BQ623399; Name=BQ623399; organism=Citrus sinensis; type=EST; length=613bp
GAAGAGAGTCCTTCATTATCTTAACCTCCATTTCCTCTCCAACAAACTTT
CCTTCACCTTGCAAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCT
AGAAACCATGGCTAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTA
AGCTAAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTA
TTTAAGATTGAGGAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGA
GCCAACTCAAACCTATGAAGATTTTGCTGCCAGCCTTCCTGCTGAGGAGT
GCCGATATGCTGTGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAA
AAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACACTGCAAGAGTAAG
AAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAGCTAG
ATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTT
GACGTATTTAAAAGACCGTGCCCACTAAATAAAGGCTTCTGATCTCAGCA
ATTGAGATTGGTTTTATCTTTGTGCTTTACCTAAGGGGAAATGGTAATAG
TTTGTGGCGGCAG
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