BQ623399

Overview
NameBQ623399
Unique NameBQ623399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:98..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: DEST_BOVIN (Destrin OS=Bos taurus GN=DSTN PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 6.742e-16
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGEP---------TQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM 494
            ASG+ V D+    F ++K          K+  + ++F +   +K +IVE+  E          T  ++ F   LP ++CRYA+YD  F T E+ +K  + F  W+P+ A ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: DEST_RAT (Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.150e-15
Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGEP---------TQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM 494
            ASG+ V D+    F ++K          K+  + ++F +   +K ++VE+  E          T  ++ F   LP ++CRYA+YD  F T E+ +K  + F  W+P+ A ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIVVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDL 143          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: DEST_MOUSE (Destrin OS=Mus musculus GN=Dstn PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.150e-15
Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGEP---------TQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM 494
            ASG+ V D+    F ++K          K+  + ++F +   +K ++VE+  E          T  ++ F   LP ++CRYA+YD  F T E+ +K  + F  W+P+ A ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIVVEEGKEILVGDVGATITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDL 143          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF2_CHICK (Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.150e-15
Identity = 54/149 (36.24%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            ASG+ V+D+    F ++K          K+  + ++F + + +KQ+IVE+     +G+   T ED    F   LP  +CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++  GI+ E Q       GLD  K
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIGDTVEDPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIK 144          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF2_PIG (Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4)

HSP 1 Score: 82.0333 bits (201), Expect = 2.562e-15
Identity = 53/149 (35.57%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            ASG+ V+D+    F ++K          K+  + ++F + + ++Q+IVE+     +G+   T ED    F   LP  +CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++  GI+ E Q       GLD  K
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIK 144          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF2_MOUSE (Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.562e-15
Identity = 53/149 (35.57%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            ASG+ V+D+    F ++K          K+  + ++F + + ++Q+IVE+     +G+   T ED    F   LP  +CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++  GI+ E Q       GLD  K
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIK 144          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF2_HUMAN (Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.562e-15
Identity = 53/149 (35.57%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            ASG+ V+D+    F ++K          K+  + ++F + + ++Q+IVE+     +G+   T ED    F   LP  +CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++  GI+ E Q       GLD  K
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIK 144          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF2_BOVIN (Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.562e-15
Identity = 53/149 (35.57%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            ASG+ V+D+    F ++K          K+  + ++F + + ++Q+IVE+     +G+   T ED    F   LP  +CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++  GI+ E Q       GLD  K
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIK 144          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF1A_XENLA (Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 5.707e-15
Identity = 51/136 (37.50%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELK---------AKRTYRFIVFKIEEKQKQVIVEKLGEPTQ---------TYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQ 473
            ASG+ V DD    F E+K         AK+  + +VF + + +K +I+E   E  Q          Y+ F   LP  +CRYA+YD  + T E  +K  + F+ W+P+ A ++SKMIYASSKD  K+ L GI+ E Q
Sbjct:    2 ASGVMVSDDVIKVFNEMKVRHQLSPEDAKKRKKAVVFCLSDDKKTIILEPGKEILQGDIGCNVEDPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRLPGIKHEWQ 136          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF1_XENTR (Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.661e-14
Identity = 50/136 (36.76%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELK---------AKRTYRFIVFKIEEKQKQVIVEKLGEPTQ---------TYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQ 473
            ASG+ V DD    F ++K         AK+  + +VF + E +K +I+E   E  Q          Y+ F   LP  +CRYA+YD  + T E  +K  + F+ W+P+ A ++SKMIYASSKD  K+   GI+ E Q
Sbjct:    2 ASGVMVSDDVIKVFNDMKVRHQLSPEEAKKRKKAVVFCLSEDKKMIILEPGKEILQGDVGCNVDDPYKAFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRFPGIKHEWQ 136          
The following BLAST results are available for this feature:
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
DEST_BOVIN6.742e-1634.27Destrin OS=Bos taurus GN=DSTN PE=2 SV=3[more]
DEST_RAT1.150e-1533.57Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3[more]
DEST_MOUSE1.150e-1533.57Destrin OS=Mus musculus GN=Dstn PE=1 SV=3[more]
COF2_CHICK1.150e-1536.24Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2[more]
COF2_PIG2.562e-1535.57Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4[more]
COF2_MOUSE2.562e-1535.57Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1[more]
COF2_HUMAN2.562e-1535.57Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1[more]
COF2_BOVIN2.562e-1535.57Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1[more]
COF1A_XENLA5.707e-1537.50Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3[more]
COF1_XENTR1.661e-1436.76Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00490 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00490 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623399 ID=BQ623399; Name=BQ623399; organism=Citrus sinensis; type=EST; length=613bp
GAAGAGAGTCCTTCATTATCTTAACCTCCATTTCCTCTCCAACAAACTTT
CCTTCACCTTGCAAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCT
AGAAACCATGGCTAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTA
AGCTAAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTA
TTTAAGATTGAGGAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGA
GCCAACTCAAACCTATGAAGATTTTGCTGCCAGCCTTCCTGCTGAGGAGT
GCCGATATGCTGTGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAA
AAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACACTGCAAGAGTAAG
AAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAGCTAG
ATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTT
GACGTATTTAAAAGACCGTGCCCACTAAATAAAGGCTTCTGATCTCAGCA
ATTGAGATTGGTTTTATCTTTGTGCTTTACCTAAGGGGAAATGGTAATAG
TTTGTGGCGGCAG
back to top