BQ623399

Overview
NameBQ623399
Unique NameBQ623399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:98..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF4_DICDI (Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 34/130 (26.15%), Postives = 76/130 (58.46%), Query Frame = 3
Query:  132 AVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKRPC 521
            +++D+   K+ EL      + I+ K  +  K+V+ E      +++ED+    P ++CRY VYD+ ++  +  +K++IFFI+W P   ++++K+++ +++    ++L GI   ++ATD +E+   + +  C
Sbjct:    6 SINDEVITKYNELILGHISKGIIIKFSDDFKEVVFEDSFNG-ESFEDYINKFPQDDCRYGVYDFSYMDNKENKKNKIFFISWCPVETKIKNKIVHTATEQSIYKKLVGIDAIIKATDNTEISQSLVEERC 134          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF1B_XENLA (Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 51/154 (33.12%), Postives = 77/154 (50.00%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELK---------AKRTYRFIVFKIEEKQKQVIVEKLGEPTQ---------TYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKRPCPL 527
            ASG+ V DD    F ++K         AK+  + ++F + + +K +I+E   E  Q          Y+ F   LP  +CRYA+YD  + T E  +K  + F+ W+P+ A ++SKMIYASSKD  ++   GI+ E Q         D    PC L
Sbjct:    2 ASGVMVSDDVVKVFNDMKVRHQLSPEEAKKRKKAVIFCLSDDKKTIILEPGKEILQGDVGCNVEDPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIRKRFTGIKHEWQTNT-----YDDINDPCNL 149          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF2_CAEEL (Actin-depolymerizing factor 2, isoform c OS=Caenorhabditis elegans GN=unc-60 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.713e-12
Identity = 42/137 (30.66%), Postives = 72/137 (52.55%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASL-----PAEECRYAVYDYDFVTAENCQK-----SRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQ--VELQATDPSEM 494
            ASG+ V   CK  +  L  K  + +I+FKI++    ++VEK+GE    Y +F   +       +ECRYA  D +        +     +++ F+ + PD A VR +M+YASS    K  L G++   ++QA++ S++
Sbjct:    2 ASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKLVEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDL 137          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: COF3_DICDI (Cofilin-3 OS=Dictyostelium discoideum GN=cofD-1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.316e-11
Identity = 36/125 (28.80%), Postives = 69/125 (55.20%), Query Frame = 3
Query:  135 VHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVF 509
            +  +C+  F ++K +  Y+ I+ K+ E +  ++V+K       + + A SLP ++CR  +Y Y     ++ + S++FFI W PD+A  + K+IY ++K      L GI  ++ A++  E+   VF
Sbjct:   11 ISPECQTHFQDIKFRNKYQGILLKVNE-ESNMVVDKTLVAEGEFSELAQSLPTDQCRIIIYRY-----KSGEGSKLFFIYWGPDSAPQQDKLIYGNAKVTLAITLKGIDHKISASNLKEISEQVF 129          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF1_CAEEL (Actin-depolymerizing factor 1, isoforms a/b OS=Caenorhabditis elegans GN=unc-60 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 53/162 (32.72%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  120 ASGMAVHDDCKLKFLEL-KAKRTYRFIVFKIEEKQKQVIVE------KLGEPTQTYED--------FAASLPAE-----ECRYAVYDYDF----VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKREL-DGIQVELQATDPSEMGLDVFKRPCPLN 530
            +SG+ V  D +  F +L + ++ YR+I+FKI+E +  VIVE      +LG     Y+D        F   + +      +CRYAV+D+ F    V A   +  +I F+   PD A ++ KM+YASS    K  L  G  ++ Q +D SEM        CP N
Sbjct:    2 SSGVMVDPDVQTSFQKLSEGRKEYRYIIFKIDENK--VIVEAAVTQDQLGITGDDYDDSSKAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAGTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNNCPDN 161          
The following BLAST results are available for this feature:
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
COF4_DICDI6.310e-1426.15Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3... [more]
COF1B_XENLA6.310e-1433.12Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3[more]
ADF2_CAEEL7.713e-1230.66Actin-depolymerizing factor 2, isoform c OS=Caenor... [more]
COF3_DICDI1.316e-1128.80Cofilin-3 OS=Dictyostelium discoideum GN=cofD-1 PE... [more]
ADF1_CAEEL5.000e-1132.72Actin-depolymerizing factor 1, isoforms a/b OS=Cae... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00490 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00490 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623399 ID=BQ623399; Name=BQ623399; organism=Citrus sinensis; type=EST; length=613bp
GAAGAGAGTCCTTCATTATCTTAACCTCCATTTCCTCTCCAACAAACTTT
CCTTCACCTTGCAAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCT
AGAAACCATGGCTAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTA
AGCTAAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTA
TTTAAGATTGAGGAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGA
GCCAACTCAAACCTATGAAGATTTTGCTGCCAGCCTTCCTGCTGAGGAGT
GCCGATATGCTGTGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAA
AAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACACTGCAAGAGTAAG
AAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAGCTAG
ATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTT
GACGTATTTAAAAGACCGTGCCCACTAAATAAAGGCTTCTGATCTCAGCA
ATTGAGATTGGTTTTATCTTTGTGCTTTACCTAAGGGGAAATGGTAATAG
TTTGTGGCGGCAG
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