BQ623407

Overview
NameBQ623407
Unique NameBQ623407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623407_ssr23 microsatellite BQ623407_ssr23:23..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig199 contig Csv1_Contig199:42..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623407 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 8.916e-12
Identity = 44/127 (34.65%), Postives = 65/127 (51.18%), Query Frame = 2 
Query:  107 ATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLSKEDVKVSVEE 487
            A+S   ++   A+R Q    + D +VDV+ +S          PR    D+    + DP  P R++ Q+L+ +D LL D       SR G        WD +E E+ + +R DMPGL KEDVK+SVE+
Sbjct:   25 ASSASRSFNTNAMR-QYDQHSDDRNVDVYRHSF---------PRTRRDDLLLSDVFDPFSPPRSLSQVLNMVD-LLTDNPVLSAASRRG--------WDARETEDALFLRLDMPGLGKEDVKISVEQ 132

HSP 2 Score: 28.4906 bits (62), Expect = 8.916e-12
Identity = 21/42 (50.00%), Postives = 26/42 (61.90%), Query Frame = 1 
Query:  505 KESTGQKKLGGASFSSYDTRLQLPDNCEK-DKGKAELKNGVL 627
            KES  +K+  G  FSS   R+ LP+   K D  KAE+KNGVL
Sbjct:  144 KESE-EKEKSGRRFSS---RIDLPEKLYKIDVIKAEMKNGVL 181
The following BLAST results are available for this feature:
BLAST of BQ623407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
HS22M_PEA8.916e-1234.65Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00498 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00498 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623407 ID=BQ623407; Name=BQ623407; organism=Citrus sinensis; type=EST; length=630bp
AATGGCTGCAACATTATCTATCTCATCATCATCACCCTTGGTATCGCGCG
AGGCCAGGACCTCAATAGCTAGGAGAAATGTGGCGCCATGCTCGGTAACC
TTACCGGCAACGTCAAGGAAAGGCGCCTATCGGCTACAAGCCGTGAGAGC
TCAGGCTGGTGGGGAGAACAAGGATACTTCGGTTGACGTCCATGTTAATT
CCGGTAACCAAGGAACCCAAGTGGAGAGGAGGCCTCGAAGAACGGCTCTC
GATATTTCACCTTTCGGTTTGATGGATCCCTCGTTTCCAACGAGGACAAT
GCGGCAGATGCTGGACACAATGGACCGTCTATTAGAGGATACGATGGCTT
TTCCGGGGAGGAGCCGGGCTGGCGGGGGAGGCCAGGTGAGAACACCGTGG
GACATCAAAGAGGAGGAAAATGAGATCAAAATGAGATTTGACATGCCTGG
ACTCTCTAAGGAGGATGTCAAAGTGTCGGTGGAAGAATGAAGTCCTTGTC
ATTAAAGGAGAGCACAGGGCAGAAGAAGCTTGGAGGTGCAAGTTTTAGCT
CTTACGATACTCGTCTCCAGCTTCCTGATAACTGTGAGAAAGATAAGGGC
AAGGCAGAGCTCAAGAATGGGGTTCTTTAC
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