BQ623412

Overview
NameBQ623412
Unique NameBQ623412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1367 contig Csv1_Contig1367:26..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623412 vs. ExPASy Swiss-Prot
Match: VATF1_DROPS (V-type proton ATPase subunit F 1 OS=Drosophila pseudoobscura pseudoobscura GN=Vha14 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.662e-29
Identity = 56/112 (50.00%), Postives = 81/112 (72.32%), Query Frame = 2
Query:   74 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 409
            LI++I DEDT VGFLL GVG ++  R  N+++VD  T + ++ED FK F  R+DI I+LI+Q  A  IR ++D+H  P+PA+LEIPSKDHPYD ++DS+L R + + + E +
Sbjct:   11 LISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTPVSELEDCFKRFLKRDDIDIILINQNCAELIRHVIDAHTSPVPAVLEIPSKDHPYDASKDSILRRARGMFNPEDL 122          
BLAST of BQ623412 vs. ExPASy Swiss-Prot
Match: VATF_XENLA (V-type proton ATPase subunit F (Fragment) OS=Xenopus laevis GN=atp6s14 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.818e-28
Identity = 53/109 (48.62%), Postives = 83/109 (76.15%), Query Frame = 2
Query:   83 MIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 409
            +I DEDTV GFLL G+G ++  RK N+L+V+ +T++ +IE+ F+ F +R+DI I+LI+Q++A  IR ++D+H   IPA+LEIPSK+HPYD  +DS+L R K + ++E +
Sbjct:    1 VIGDEDTVTGFLLGGIGELNKNRKPNFLVVEKETSVTEIEETFRSFLNRDDIGIILINQFIAEMIRHVIDTHTISIPAVLEIPSKEHPYDATKDSILRRAKGMFTMEDL 109          
BLAST of BQ623412 vs. ExPASy Swiss-Prot
Match: VATF_NEUCR (V-type proton ATPase subunit F OS=Neurospora crassa GN=vma-7 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.457e-25
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 2
Query:   77 IAMIADEDTVVGFLLAGVGNVDLR--RKTNYLIVDSKTTIKQIEDAFKEFTS-REDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNL 391
            +A+I DED+V G LLAG+G+V      + N+L+VD+KT    IE AF  FT+ R+DI IVLI+Q++A+RIR  VD+H    P +LEIPSKDHPYDP +DSVL RV+ L
Sbjct:   14 LAVIGDEDSVTGLLLAGIGHVTAPPDSQKNFLVVDNKTDNAAIEAAFDRFTTERKDIGIVLINQHIADRIRHRVDTHTAAFPTVLEIPSKDHPYDPEKDSVLRRVRRL 121          
BLAST of BQ623412 vs. ExPASy Swiss-Prot
Match: VATF_SCHPO (V-type proton ATPase subunit F OS=Schizosaccharomyces pombe GN=vma7 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.190e-25
Identity = 55/108 (50.93%), Postives = 80/108 (74.07%), Query Frame = 2
Query:   74 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTS-REDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLV 394
            L+++I D+DTV G LLAG G V+     N+ I+  KTT +QI +AF ++T+ R+DIAIVLI+Q+ A RIR  +++H +  PA+LEIPSKD PYDP +DS+L RV+ ++
Sbjct:   11 LVSVIGDDDTVTGMLLAGTGQVNENGDKNFFIITQKTTDEQIAEAFDDYTTKRKDIAIVLINQFAAERIRDRIENHVQAFPAVLEIPSKDDPYDPEKDSILRRVRKII 118          
BLAST of BQ623412 vs. ExPASy Swiss-Prot
Match: VATF_YEAST (V-type proton ATPase subunit F OS=Saccharomyces cerevisiae GN=VMA7 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.473e-25
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 2
Query:   74 LIAMIADEDTVVGFLLAGVGNV--DLRRKTNYLIVDSKTTIKQIEDAFKEFTS-REDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNL 391
            LIA+IADEDT  G LLAG+G +  + + K  ++  + KTT ++I D F  FT  R+DIAI+LI+Q++A  IR  VDS     PAILEIPSKDHPYDP +DSVL RV+ L
Sbjct:    7 LIAVIADEDTTTGLLLAGIGQITPETQEKNFFVYQEGKTTKEEITDKFNHFTEERDDIAILLINQHIAENIRARVDSFTNAFPAILEIPSKDHPYDPEKDSVLKRVRKL 115          
BLAST of BQ623412 vs. ExPASy Swiss-Prot
Match: VATF2_DROME (Probable V-type proton ATPase subunit F 2 OS=Drosophila melanogaster GN=CG1076 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.921e-16
Identity = 38/72 (52.78%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  182 TTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVS 397
            TT KQIE+ FK+F  R DI I+LI+Q  A+ IR  VD+HN  +P +LEIPSK HPYD ++DS+L R + +++
Sbjct:   52 TTPKQIEECFKKFLRRPDIVIILINQVYADMIRPTVDAHNLAVPTVLEIPSKQHPYDSSRDSILKRAQRVIT 123          
The following BLAST results are available for this feature:
BLAST of BQ623412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
VATF1_DROPS3.662e-2950.00V-type proton ATPase subunit F 1 OS=Drosophila pse... [more]
VATF_XENLA1.818e-2848.62V-type proton ATPase subunit F (Fragment) OS=Xenop... [more]
VATF_NEUCR2.457e-2555.56V-type proton ATPase subunit F OS=Neurospora crass... [more]
VATF_SCHPO4.190e-2550.93V-type proton ATPase subunit F OS=Schizosaccharomy... [more]
VATF_YEAST5.473e-2555.05V-type proton ATPase subunit F OS=Saccharomyces ce... [more]
VATF2_DROME7.921e-1652.78Probable V-type proton ATPase subunit F 2 OS=Droso... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00503 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00503 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623412 ID=BQ623412; Name=BQ623412; organism=Citrus sinensis; type=EST; length=668bp
GGTAGCTGGTAAAAAGAATTTAATTTATGCAGCATGGCTAATAGACCTCA
AATACCGTACCGCTGCCTCGGCGCTCATCGCTATGATCGCAGATGAGGAC
ACTGTAGTTGGATTTTTGCTTGCTGGAGTTGGGAATGTTGACTTGCGGAG
GAAGACAAATTACCTTATTGTGGACTCAAAAACAACTATAAAGCAAATTG
AAGATGCATTTAAAGAGTTCACATCCAGGGAGGATATCGCAATAGTTCTA
ATTAGCCAATATGTTGCAAACAGGATAAGGTTTTTGGTTGATAGCCATAA
CAAGCCGATCCCTGCAATTTTGGAGATACCTTCCAAGGATCATCCGTATG
ATCCTGCACAAGATTCAGTTCTTTCACGAGTGAAGAACCTCGTCTCTGTA
GAATCTGTGGCATCTGACAGGCGCTGAGCTTAGATATACAGTGGTGTCTC
TGTTTAATCTCCTTTCCCTCGACTGCATATTTATATAGTTACATATATGA
TTCTTCCTATATTTGTACTTGGGTAATTTTTCTACCAACTATTCATGAAC
TCTGGTGAAGAAATATTAGTTTGGATACAAGGTTGTGTTTTATATGTATG
TATTTTGTGTGCATAATACACGGGGGCTTTGGACTGAAATCATTTGGTGA
GAAAAAAAAAACCATCTG
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