BQ623413 | Citrus Genome Database

Overview


Name	BQ623413
Unique Name	BQ623413
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	596

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
BQ623413_ssr10	microsatellite	BQ623413_ssr10:10..21.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13754	contig	Csv1_Contig13754:31..626.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623413 vs. ExPASy Swiss-Prot
Match: RS10_METPE (30S ribosomal protein S10P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps10p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.498e-14
Identity = 36/100 (36.00%), Postives = 61/100 (61.00%), Query Frame = 3

Query:  138 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 437
            + K RI L+  +   +E VC  +   A+   + + GP+ +PTK L +  RKSP GEGT TWDR+++RVHKR+ID+ +    ++Q+  I +   + +E+ +
Sbjct:    1 MQKARIRLTGTDFNKVEMVCDKIREIAERTGVNLAGPIPLPTKRLVVPIRKSPDGEGTATWDRWQMRVHKRLIDIDADERALRQLMRIQVPKDIGIEIVL 100

[Close]

BLAST of BQ623413 vs. ExPASy Swiss-Prot
Match: RS10_METM7 (30S ribosomal protein S10P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps10p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.498e-14
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 3

Query:  138 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 437
            + K RI LSS     L+ VC  +   A+   + + GP+ +PTK L +TTRKS  GEG++++DR+ +RVHKRVID+ +    +K I  + I   V++E+ +
Sbjct:    1 MQKARIKLSSTQHTELDGVCDQIKAIAEKTGVDMAGPIPLPTKALKVTTRKSTDGEGSSSFDRWTMRVHKRVIDIEADERTMKHIMKVRIPDTVQIEIEL 100

[Close]

BLAST of BQ623413 vs. ExPASy Swiss-Prot
Match: RS10_PYRIL (30S ribosomal protein S10P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps10p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.569e-14
Identity = 36/98 (36.73%), Postives = 68/98 (69.39%), Query Frame = 3

Query:  144 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 437
            K+RI L   N  ++E+V  ++V  AK   ++VKGP+ +PT+ L +T R++P G+G +T+D +ELR+ KR+ID+ +S  V++++ +I +   V++E+ +
Sbjct:    8 KVRIRLYGTNPADVEQVAREIVDLAKKMGVQVKGPIPLPTRRLVVTVRRAPSGQGYHTFDHWELRISKRLIDIEASERVLRRLMTIRVPDTVKIELQL 105

[Close]

BLAST of BQ623413 vs. ExPASy Swiss-Prot
Match: RS10_METM6 (30S ribosomal protein S10P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps10p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.569e-14
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 3

Query:  138 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 437
            + K RI LSS     L+ VC  +   A+   + + GP+ +PTK L +TTRKS  GEG++++DR+ +RVHKRVID+ +    +K I  + I   V++E+ +
Sbjct:    1 MQKARIKLSSTQHVELDGVCDQIKAIAEKTGVDMAGPIPLPTKALKVTTRKSTDGEGSSSFDRWTMRVHKRVIDIEADERTMKHIMKVRIPDTVQIEIEL 100

[Close]

BLAST of BQ623413 vs. ExPASy Swiss-Prot
Match: RS10_METHJ (30S ribosomal protein S10P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps10p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.569e-14
Identity = 35/100 (35.00%), Postives = 62/100 (62.00%), Query Frame = 3

Query:  138 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 437
            + K RI L+  + + +E+VC  +   A+   + + GP+ +PT+ L +  RKSP GEGT TWDR+++RVHKR+IDL +    ++Q+    +   + +E+ +
Sbjct:    1 MQKARIRLTGTDYQKVEEVCEKIKEIAERTGVNLAGPIPLPTRKLVVPIRKSPDGEGTATWDRWQMRVHKRLIDLDADERALRQLMRTQVPKDIGIEIVL 100

[Close]

BLAST of BQ623413 vs. ExPASy Swiss-Prot
Match: RS10_PYRCJ (30S ribosomal protein S10P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps10p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 36/98 (36.73%), Postives = 67/98 (68.37%), Query Frame = 3

Query:  144 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 437
            K+RI L   N  +L++V  ++V  AK   + V+GP+ +PTK L +T R++P G+G +T+D +ELR+ KR+ID+ +S  V++++ +I +   V++E+ +
Sbjct:    8 KVRIRLYGTNPADLDQVAREIVDLAKKMGVAVRGPIPLPTKRLMVTVRRAPSGQGYHTFDHWELRISKRLIDIEASERVLRRLMTIRVPDTVKIELQL 105

[Close]

BLAST of BQ623413 vs. ExPASy Swiss-Prot
Match: RS10_METST (30S ribosomal protein S10P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps10p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.793e-14
Identity = 33/100 (33.00%), Postives = 62/100 (62.00%), Query Frame = 3

Query:  138 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 437
            ++K RI L+  + + +  VC  L + A+   + + GP+ +PTK L + TRKSP GEG  TW+++ELR+HKR++ + +    ++Q+  + +   V +E+ +
Sbjct:    1 MNKARIKLTGTDPEKIADVCNQLKKIAERTGVDLSGPIPLPTKKLVVPTRKSPDGEGKATWEKWELRIHKRLVGIEADERAMRQVMKVNVPDNVSIEIEL 100

[Close]

BLAST of BQ623413 vs. ExPASy Swiss-Prot
Match: RS10_METS3 (30S ribosomal protein S10P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps10p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.018e-13
Identity = 33/100 (33.00%), Postives = 62/100 (62.00%), Query Frame = 3

Query:  138 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 437
            +H+ RI L+  + + L  VC  L + A+   + + GP+ +PTK L + TRKSP GEG  +W+++ELR+HKR++ + +    ++Q+  + +   V +E+ +
Sbjct:    1 MHQARIKLTGTDPEKLAYVCDQLKKIAERTGVDLSGPIPLPTKKLVVPTRKSPDGEGKASWEKWELRIHKRLVGIGADERAMRQVMKVNVPDNVSIEIEL 100

[Close]

BLAST of BQ623413 vs. ExPASy Swiss-Prot
Match: RS10_HYPBU (30S ribosomal protein S10P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps10p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 36/100 (36.00%), Postives = 62/100 (62.00%), Query Frame = 3

Query:  138 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 437
            + K  I L S NV++L +V   +   AK   +R++GP+ +PT+ L + T K P GEG+  WD++ELR+HKR++ L +   V++QI  + +   V +E+ +
Sbjct:    2 VQKAEIKLWSTNVESLNQVVEQIKAIAKKTGVRMRGPIPLPTRRLIVPTLKLPHGEGSKKWDKWELRIHKRLVILDADERVIRQIMRVRVPEDVYIEIRL 101

[Close]

BLAST of BQ623413 vs. ExPASy Swiss-Prot
Match: RS10_PYRAE (30S ribosomal protein S10P OS=Pyrobaculum aerophilum GN=rps10p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.736e-13
Identity = 34/98 (34.69%), Postives = 68/98 (69.39%), Query Frame = 3

Query:  144 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 437
            K+RI L   N  ++E+V  ++V  AK   ++V+GP+ +PT+ L +T R++P G+G +T+D +E+R+ KR+ID+ +S  V++++ +I +   V++E+ +
Sbjct:    8 KVRIRLYGTNPADVEQVAREIVDLAKKMGVQVRGPIPLPTRRLIVTVRRAPSGQGYHTFDHWEMRISKRLIDIEASERVLRRLMTIRVPDTVKIELQL 105

The following BLAST results are available for this feature:

BLAST of BQ623413 vs. ExPASy Swiss-Prot

BLAST of BQ623413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74


Match Name	E-value	Identity	Description
RS10_METPE	3.498e-14	36.00	30S ribosomal protein S10P OS=Methanosphaerula pal...	[more]
RS10_METM7	3.498e-14	39.00	30S ribosomal protein S10P OS=Methanococcus maripa...	[more]
RS10_PYRIL	4.569e-14	36.73	30S ribosomal protein S10P OS=Pyrobaculum islandic...	[more]
RS10_METM6	4.569e-14	39.00	30S ribosomal protein S10P OS=Methanococcus maripa...	[more]
RS10_METHJ	4.569e-14	35.00	30S ribosomal protein S10P OS=Methanospirillum hun...	[more]
RS10_PYRCJ	5.967e-14	36.73	30S ribosomal protein S10P OS=Pyrobaculum calidifo...	[more]
RS10_METST	7.793e-14	33.00	30S ribosomal protein S10P OS=Methanosphaera stadt...	[more]
RS10_METS3	1.018e-13	33.00	30S ribosomal protein S10P OS=Methanobrevibacter s...	[more]
RS10_HYPBU	1.329e-13	36.00	30S ribosomal protein S10P OS=Hyperthermus butylic...	[more]
RS10_PYRAE	1.736e-13	34.69	30S ribosomal protein S10P OS=Pyrobaculum aerophil...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00504 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00504 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623413 ID=BQ623413; Name=BQ623413; organism=Citrus sinensis; type=EST; length=596bp
GGGCAGCAACAGCAGCAGCAGCTCTCACTCTTCCGGTCTCTCGAAATCCT
ATAAGGAAAATCTAGTAGAAGCAAGAAACAATGGCGTATGCAGCAATGAA
GCCCACCAAACCGGGTTTGGAGGAGGCCCAGGAGCAGATTCATAAGATCA
GAATCACACTTTCCTCCAAGAATGTTAAAAATCTTGAGAAAGTCTGTACG
GATTTAGTTCGTGGTGCCAAGGACAAGAGATTGAGGGTCAAGGGTCCAGT
GAGGATGCCTACCAAGGTTCTTCACATCACCACTAGGAAGTCCCCTTGTG
GTGAAGGAACCAACACTTGGGACAGATTTGAGCTCCGTGTTCACAAGAGA
GTTATTGATCTCTTTAGCTCCCCTGATGTCGTGAAGCAGATCACTTCCAT
TACCATTGAACCTGGCGTGGAAGTGGAGGTTACCATTGCCGACTCTTAAA
TGTCTGGCACTTTATTTTTGTGTCCATTTAGCTTTTAGTGAAATCAGAAG
TAATCTTCCCTCATGACACTGTTTGCTTGGAAGAATTTGTCAAGAATTTA
AGACTGAACAATCGATGTAGGGGTGATGTAGTTTGTTTTTTGCCAT