BQ623413

Overview
NameBQ623413
Unique NameBQ623413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623413_ssr10 microsatellite BQ623413_ssr10:10..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13754 contig Csv1_Contig13754:31..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623413 vs. ExPASy Swiss-Prot
Match: RS10_AERPE (30S ribosomal protein S10P OS=Aeropyrum pernix GN=rps10p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.274e-12
Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 3
Query:  144 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEV 431
            K+RI L S NV++LE V   +   A    +R++GPV +P K L +   + P GEG+  W+ +E++VHKR+IDL +   V++ +  I +   V +E+
Sbjct:    4 KLRIWLWSTNVRSLENVVEQIRNIANKTGIRMRGPVPLPVKRLEVPVFRLPHGEGSKYWEHWEMKVHKRLIDLEADERVLRHLMRIKVPEDVYIEI 99          
BLAST of BQ623413 vs. ExPASy Swiss-Prot
Match: RS10_SULTO (30S ribosomal protein S10P OS=Sulfolobus tokodaii GN=rps10p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 30/98 (30.61%), Postives = 56/98 (57.14%), Query Frame = 3
Query:  144 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 437
            K RI L S N++NL  V   +   A+   + + GP+ +PT  + +   + P GEG   W+ +E+++HKR+ID+ S   V++Q+  + +   V +E+ +
Sbjct:    4 KARIRLWSTNIENLNFVVNQIKTLAQKTGVEISGPIPLPTSRMEVPVMRLPHGEGKKKWEHWEMKIHKRIIDIASDERVMRQLMRVRVPDDVYIEIEL 101          
BLAST of BQ623413 vs. ExPASy Swiss-Prot
Match: RS10_SULAC (30S ribosomal protein S10P OS=Sulfolobus acidocaldarius GN=rps10p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 30/98 (30.61%), Postives = 56/98 (57.14%), Query Frame = 3
Query:  144 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 437
            K RI L S N+ +L  V   +   A+   ++V GP+ +PT  + +   + P GEG   W+ +E++VHKR+ID+ +   V++Q+  + +   V +E+ +
Sbjct:    4 KARIRLWSSNIDSLNFVVNQIRNMAQKTGIQVSGPIPLPTTRMEVPVMRLPHGEGKKKWEHWEMKVHKRIIDIAADERVMRQLMRVRVPDDVYIEIEL 101          
BLAST of BQ623413 vs. ExPASy Swiss-Prot
Match: RS10_METS5 (30S ribosomal protein S10P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps10p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 32/100 (32.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:  141 HKIRITLSSKNVKNLEKVCTDLVRGAKDKR-LRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 437
            +K RI L S NV NL  V    ++G  DK  + ++GP+ +PT+ + +   + P GEG   W+++E+ +HKR+ID+ +   V++Q+  + +   V +E+ +
Sbjct:    3 NKARIRLWSTNVNNLNYVVNQ-IKGIVDKTGVSMRGPIPLPTRRMEVPVMRLPHGEGRKKWEKWEMSLHKRIIDISADERVMRQLMRVKVPEDVYIEIQL 101          
The following BLAST results are available for this feature:
BLAST of BQ623413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RS10_AERPE3.274e-1236.4630S ribosomal protein S10P OS=Aeropyrum pernix GN=... [more]
RS10_SULTO1.244e-1130.6130S ribosomal protein S10P OS=Sulfolobus tokodaii ... [more]
RS10_SULAC4.728e-1130.6130S ribosomal protein S10P OS=Sulfolobus acidocald... [more]
RS10_METS54.728e-1132.0030S ribosomal protein S10P OS=Metallosphaera sedul... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00504 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00504 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623413 ID=BQ623413; Name=BQ623413; organism=Citrus sinensis; type=EST; length=596bp
GGGCAGCAACAGCAGCAGCAGCTCTCACTCTTCCGGTCTCTCGAAATCCT
ATAAGGAAAATCTAGTAGAAGCAAGAAACAATGGCGTATGCAGCAATGAA
GCCCACCAAACCGGGTTTGGAGGAGGCCCAGGAGCAGATTCATAAGATCA
GAATCACACTTTCCTCCAAGAATGTTAAAAATCTTGAGAAAGTCTGTACG
GATTTAGTTCGTGGTGCCAAGGACAAGAGATTGAGGGTCAAGGGTCCAGT
GAGGATGCCTACCAAGGTTCTTCACATCACCACTAGGAAGTCCCCTTGTG
GTGAAGGAACCAACACTTGGGACAGATTTGAGCTCCGTGTTCACAAGAGA
GTTATTGATCTCTTTAGCTCCCCTGATGTCGTGAAGCAGATCACTTCCAT
TACCATTGAACCTGGCGTGGAAGTGGAGGTTACCATTGCCGACTCTTAAA
TGTCTGGCACTTTATTTTTGTGTCCATTTAGCTTTTAGTGAAATCAGAAG
TAATCTTCCCTCATGACACTGTTTGCTTGGAAGAATTTGTCAAGAATTTA
AGACTGAACAATCGATGTAGGGGTGATGTAGTTTGTTTTTTGCCAT
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