BQ623414

Overview
NameBQ623414
Unique NameBQ623414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11438 contig Csv1_Contig11438:186..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: UB2V1_CHICK (Ubiquitin-conjugating enzyme E2 variant 1 OS=Gallus gallus GN=UBE2V1 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 9.421e-25
Identity = 49/109 (44.95%), Postives = 73/109 (66.97%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 402
            ++G++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN   GVV+P+   +L  WQ  ++++ +L +L++ M +  N KL QPPEG
Sbjct:   32 SWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSFSIKVVLQELRRLMMSKENMKLPQPPEG 140          
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: UB2V2_MOUSE (Ubiquitin-conjugating enzyme E2 variant 2 OS=Mus musculus GN=Ube2v2 PE=2 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 49/109 (44.95%), Postives = 74/109 (67.89%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 402
            ++G++D +D+ +  WTG IIGP  T +E RIY LK+ C   YPE PPSVRF ++INM  +N+ +G+V+ +   +L  WQ  Y+++ IL +L++ M +  N KL QPPEG
Sbjct:   32 SWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGSKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVILQELRRLMMSKENMKLPQPPEG 140          
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: UB2V1_PONAB (Ubiquitin-conjugating enzyme E2 variant 1 OS=Pongo abelii GN=UBE2V1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 49/109 (44.95%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 402
            ++G++D +D+ +  WTG IIGP  T++E RIY LK+ C    PE PP VRF ++INM  VN   GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   34 SWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKCPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 142          
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: UB2V2_RAT (Ubiquitin-conjugating enzyme E2 variant 2 OS=Rattus norvegicus GN=Ube2v2 PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 4.675e-24
Identity = 48/109 (44.04%), Postives = 74/109 (67.89%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 402
            ++G++D +D+ +  WTG IIGP  T +E RIY LK+ C   YPE PPSVRF ++INM  +N+ +G+V+ +   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   32 SWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGSKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 140          
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: UB2V2_PONAB (Ubiquitin-conjugating enzyme E2 variant 2 OS=Pongo abelii GN=UBE2V2 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 48/109 (44.04%), Postives = 74/109 (67.89%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 402
            ++G++D +D+ +  WTG IIGP  T +E RIY LK+ C   YPE PPSVRF ++INM  +N+ +G+V+ +   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   32 SWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 140          
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: UB2V2_HUMAN (Ubiquitin-conjugating enzyme E2 variant 2 OS=Homo sapiens GN=UBE2V2 PE=1 SV=4)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 48/109 (44.04%), Postives = 74/109 (67.89%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 402
            ++G++D +D+ +  WTG IIGP  T +E RIY LK+ C   YPE PPSVRF ++INM  +N+ +G+V+ +   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   32 SWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 140          
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: UB2V2_BOVIN (Ubiquitin-conjugating enzyme E2 variant 2 OS=Bos taurus GN=UBE2V2 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 48/109 (44.04%), Postives = 74/109 (67.89%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 402
            ++G++D +D+ +  WTG IIGP  T +E RIY LK+ C   YPE PPSVRF ++INM  +N+ +G+V+ +   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   32 SWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 140          
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: UB2V2_CHICK (Ubiquitin-conjugating enzyme E2 variant 2 OS=Gallus gallus GN=UBE2V2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.777e-23
Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 402
            ++G++D +D+ +  WTG IIGP  T +E RIY LK+ C   YPE PP+VRF ++INM  +N+  G+V+ +   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   31 SWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPTVRFVTKINMNGINNSNGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 139          
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: UB2V2_DANRE (Ubiquitin-conjugating enzyme E2 variant 2 OS=Danio rerio GN=ube2v2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.751e-23
Identity = 46/109 (42.20%), Postives = 73/109 (66.97%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 402
            ++G++D +D+ +  WTG IIGP  T +E RIY LK+ C   YPE PP+VRF ++I+M  +N+  G+V+ +   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   32 SWGLEDDEDMTLTRWTGMIIGPARTNYENRIYSLKVECGPKYPEVPPTVRFVTKISMNGINNSNGMVDARSIPILAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 140          
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: UB2V2_XENLA (Ubiquitin-conjugating enzyme E2 variant 2 OS=Xenopus laevis GN=ube2v2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22
Identity = 45/109 (41.28%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 402
            ++G++D +D+ +  WTG IIGP  T +E RIY L+L C   YPE PP+VRF +++NM  +N+  G V+ +   +L  WQ  ++++ +L +L++ M +  N KL QPPEG
Sbjct:   32 SWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLRLECGPKYPEAPPTVRFVTKMNMNGINNSNGTVDYRSIPVLAKWQNSFSIKVLLQELRRLMMSKENMKLPQPPEG 140          
The following BLAST results are available for this feature:
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
UB2V1_CHICK9.421e-2544.95Ubiquitin-conjugating enzyme E2 variant 1 OS=Gallu... [more]
UB2V2_MOUSE3.580e-2444.95Ubiquitin-conjugating enzyme E2 variant 2 OS=Mus m... [more]
UB2V1_PONAB3.580e-2444.95Ubiquitin-conjugating enzyme E2 variant 1 OS=Pongo... [more]
UB2V2_RAT4.675e-2444.04Ubiquitin-conjugating enzyme E2 variant 2 OS=Rattu... [more]
UB2V2_PONAB6.106e-2444.04Ubiquitin-conjugating enzyme E2 variant 2 OS=Pongo... [more]
UB2V2_HUMAN6.106e-2444.04Ubiquitin-conjugating enzyme E2 variant 2 OS=Homo ... [more]
UB2V2_BOVIN6.106e-2444.04Ubiquitin-conjugating enzyme E2 variant 2 OS=Bos t... [more]
UB2V2_CHICK1.777e-2343.12Ubiquitin-conjugating enzyme E2 variant 2 OS=Gallu... [more]
UB2V2_DANRE6.751e-2342.20Ubiquitin-conjugating enzyme E2 variant 2 OS=Danio... [more]
UB2V2_XENLA3.351e-2241.28Ubiquitin-conjugating enzyme E2 variant 2 OS=Xenop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00505 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00505 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623414 ID=BQ623414; Name=BQ623414; organism=Citrus sinensis; type=EST; length=671bp
GGTGGTCCCTCGGAACTTCAGATTGTTGGAGGAACTTGAACGCGGAGAAA
AGGGTATTGGAGATGGCACCTGTCAGCGTATGGAATGGATGATGGAGATG
ACATTTACATGCGCTCTTGGACTGGCACCATTATCGGTCCTCACAATACT
GTACATGAAGGTAGAATTTATCAGTTGAAGCTGTTCTGTGATAAAGATTA
TCCAGAGAAGCCACCAAGTGTTCGTTTTCATTCACGAATCAACATGACTT
GTGTTAACCATGAAACTGGAGTGGTGGAACCTAAAAAGTTTGGACTTCTT
GTGAATTGGCAGCGAGAGTACACCATGGAGGATATACTCACACAACTGAA
AAAGGAGATGGCAGCCCCACACAATCGGAAGCTGGTTCAACCTCCTGAGG
GTACCTACTTCTAGCTTCTAAGATCATATAGGTATCATGGGGCTTATTGC
ATATTACAATATGCAATATATAGATTGTATTCCTGTGTTCATCCTGTTGA
TGTTAAGAACATAGAAGGAAATGCCTGAAAGGGCCTTTTCCAATTACATC
TCCATGGCTTCATCATCGGTTTGGCTCTTTCTTTTTCTTTTTTCAACTGT
AATGGAAGGATGCTGTTTGATTAATGGGATTTTCTGTGTGTCAAATATTT
AAAAATAGAAAAATCCATCAT
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