BQ623415

Overview
NameBQ623415
Unique NameBQ623415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig22 contig Csv1_Contig22:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623415 vs. ExPASy Swiss-Prot
Match: SRF2_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 50/190 (26.32%), Postives = 88/190 (46.32%), Query Frame = 3 
Query:    9 LALGASRAIAYLHSKG-PANSHGNIKSSNILLSKSYEARVSDFGLAHLASPSSTPNRI---------DGYRAPEVTDARKVSQKADVYSFGVLLLELLTGKAPTQALLNEEGVDLPRWVQSVVKEEWTAEVF---DLELLRYQNVEEEMVQLLQLAINCTAQYPDNRPSMAEVTSQIEEICRSSLQQGQA 539
            +A+G +RA+ YLHS   P  +H ++K++NILL +    R++D GLA L   +S   ++          GY APE         K+D Y+ GVLLLELLTG+    +        L +W  + + +  + E      +       V  +   ++ L   CT    + RP ++E+   +  + +   ++  +
Sbjct:  518 IAIGVARALDYLHSSFCPPIAHSDLKATNILLDEELTPRIADCGLASLRPLTSNSVKLRASEIAIQNTGYIAPEHGQPGSSGTKSDTYALGVLLLELLTGRKAFDSSRPRGEQLLVKWASTRLHDRRSLEQMIDGGIAGTFSSRVASQYADIISL---CTQAEKEFRPPVSEIVEALTALIQKQNKEASS 704
The following BLAST results are available for this feature:
BLAST of BQ623415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
SRF2_ARATH8.165e-1126.32Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00506 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00506 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623415 ID=BQ623415; Name=BQ623415; organism=Citrus sinensis; type=EST; length=689bp
GGTCTGGCCTTGCTCTTGGAGCATCACGAGCGATTGCATACCTCCATTCA
AAGGGTCCTGCAAACTCTCATGGAAACATCAAGTCATCGAATATCCTCCT
ATCTAAATCCTATGAAGCTCGAGTTTCTGATTTTGGCCTTGCTCATCTTG
CGAGTCCCTCATCCACCCCCAACAGAATTGATGGCTACCGTGCCCCAGAG
GTGACAGACGCTCGCAAGGTATCCCAAAAAGCAGATGTCTACAGCTTTGG
TGTTTTGCTTCTGGAATTGCTTACAGGCAAGGCACCTACACAAGCCTTGC
TGAACGAGGAAGGAGTGGACCTCCCAAGATGGGTCCAATCTGTTGTAAAA
GAAGAGTGGACTGCCGAGGTTTTTGACCTCGAGCTTCTGAGATACCAAAA
TGTTGAGGAGGAGATGGTTCAACTCTTACAGCTTGCCATTAATTGCACCG
CTCAATATCCCGACAACCGCCCTTCCATGGCAGAAGTGACAAGCCAAATT
GAAGAAATCTGCCGGTCTAGCTTACAACAAGGACAAGCCCATGATTTGGA
AAACGGGTCTTCCTAGTAAGCTTATTCAATCGATTACCGTGAGCCTTCAC
CTTCAGTAATGGCCTGAAGAAGATGAGCAATCTTTCATTTGTTATCCCAG
TTTTATCATGCTAATCTAGTTCTTTAATTGTTGGGTAAA
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