BQ623416

Overview
NameBQ623416
Unique NameBQ623416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623416_ssr78 microsatellite BQ623416_ssr78:78..87. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2912 contig Csv1_Contig2912:69..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_SYNP6 (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psb28 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.803e-25
Identity = 56/96 (58.33%), Postives = 70/96 (72.92%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIG-DITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQF +G DE  VPDV+LT+SRDG NG A F F EP      GE+  DITG Y++D+EG L + +V AKF+NG+P+ +EA Y+MRSP EWDRFMR M
Sbjct:    5 IQFTRGIDEPVVPDVRLTRSRDGQNGTATFYFDEPQAL--VGEVRQDITGMYLLDDEGELATREVKAKFINGQPAGLEAVYLMRSPEEWDRFMRFM 98          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_SYNE7 (Photosystem II reaction center psb28 protein OS=Synechococcus elongatus (strain PCC 7942) GN=psb28 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.803e-25
Identity = 56/96 (58.33%), Postives = 70/96 (72.92%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIG-DITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQF +G DE  VPDV+LT+SRDG NG A F F EP      GE+  DITG Y++D+EG L + +V AKF+NG+P+ +EA Y+MRSP EWDRFMR M
Sbjct:    5 IQFTRGIDEPVVPDVRLTRSRDGQNGTATFYFDEPQAL--VGEVRQDITGMYLLDDEGELATREVKAKFINGQPAGLEAVYLMRSPEEWDRFMRFM 98          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_CYAPA (Photosystem II reaction center psb28 protein OS=Cyanophora paradoxa GN=psb28 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24
Identity = 55/95 (57.89%), Postives = 71/95 (74.74%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQFIQG DE  +PDVKL++S+DG+NG+A F F +P+VFD     G+ITG Y+IDEEG L +  V AKF+NG+P  IEA YIM +  EW+RF+R M
Sbjct:    4 IQFIQGVDEEAIPDVKLSRSQDGANGIAKFYFDKPTVFDVYQ--GEITGLYLIDEEGELSTRTVYAKFINGKPQSIEASYIMNNREEWERFIRFM 96          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_THEEB (Photosystem II reaction center psb28 protein OS=Thermosynechococcus elongatus (strain BP-1) GN=psb28 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.270e-24
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  211 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            M     IQFI+G +E  VPDV+LT++RDGS+G A+F F  P +        ++TG YM+DEEG + + DV+AKF+NG+P  IEA Y MRSP+EWDRF+R M
Sbjct:    1 MGAMAEIQFIRGINEEVVPDVRLTRARDGSSGQAMFYFDNPKIVQEGNL--EVTGMYMVDEEGEIVTRDVNAKFINGQPVAIEATYTMRSPQEWDRFIRFM 99          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_ACAM1 (Photosystem II reaction center psb28 protein OS=Acaryochloris marina (strain MBIC 11017) GN=psb28 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 53/95 (55.79%), Postives = 71/95 (74.74%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQFI+G DE  +PDV+LT+++DGS+G AIF F  P++    G++ ++ G Y+ DEEG L ++DVSAKFVNG+P  IEA Y M+S  EWDRFMR M
Sbjct:    5 IQFIRGVDEEVIPDVRLTRAKDGSSGRAIFYFENPNLIQE-GKL-EVMGMYLQDEEGELTTLDVSAKFVNGKPHAIEANYDMKSEEEWDRFMRFM 97          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_CYAME (Photosystem II reaction center psb28 protein OS=Cyanidioschyzon merolae GN=psb28 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 52/96 (54.17%), Postives = 68/96 (70.83%), Query Frame = 1
Query:  226 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            +IQFIQG DE  +P V+LT+SRDG  G A+F F +P +    GEI   TG YMIDEEG + + +V AKFVNG+P  IEA Y+M++ + W+RFMR M
Sbjct:    3 SIQFIQGVDEDIIPTVRLTRSRDGQTGTAVFRFVQPKLLQQQGEI---TGMYMIDEEGEIVTREVQAKFVNGQPQIIEALYVMKNAQAWERFMRFM 95          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_NOSP7 (Photosystem II reaction center psb28 protein OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=psb28 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 50/95 (52.63%), Postives = 68/95 (71.58%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQF +G DE+ +P+V+LT+SR G +G A F F+ P + D  G   DITG Y+ DEEG + + +V AKFVNG+P  +EA Y+M+S +EWDRFMR M
Sbjct:    4 IQFSRGLDEVVIPEVRLTRSRTGDSGTATFIFTNPKILDQ-GSTEDITGMYLSDEEGEIITREVKAKFVNGKPEALEALYVMKSAQEWDRFMRFM 97          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_CYACA (Photosystem II reaction center psb28 protein OS=Cyanidium caldarium GN=psb28 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF---DSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMR 507
            IQFI+G DE TVP+++LT+SRDG+ G AIFSF  P+VF    SS   G+ITG Y+ D+EG L + +V+A FVNG+P  +EA Y++R+   WDR MR
Sbjct:    4 IQFIKGIDEQTVPEIRLTRSRDGNTGTAIFSFINPTVFLLHSSSQNYGEITGMYLQDDEGELSTRNVTANFVNGKPKAVEAVYLIRNKSGWDRLMR 99          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_CYAP8 (Photosystem II reaction center psb28 protein OS=Cyanothece sp. (strain PCC 8801) GN=psb28 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.539e-23
Identity = 50/95 (52.63%), Postives = 67/95 (70.53%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQF +G  E  +PDV+LT+SR G +G A F F EPS+F+S     ++TG Y++DEEG + + +V  KF+NG+ + IEA  IMRSP EWDRFMR M
Sbjct:    4 IQFSRGVAEPVIPDVRLTRSRSGQSGTATFYFREPSIFNSEST-DEVTGMYLVDEEGEITTTEVKGKFINGKATDIEAILIMRSPEEWDRFMRFM 97          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_ANAVT (Photosystem II reaction center psb28 protein OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psb28 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQF +G DE  +P+V+LT+SR G  G A F F+ P + D  G   DITG Y+IDEEG + + +V  KFVNGRP  +EA Y+M+S +EW+RF+R M
Sbjct:    4 IQFSRGLDEEVIPEVRLTRSRTGDTGTATFIFTNPKILDQ-GTTEDITGMYLIDEEGEIITREVKGKFVNGRPEGVEAVYVMKSAQEWERFIRFM 97          
The following BLAST results are available for this feature:
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PSB28_SYNP67.803e-2558.33Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_SYNE77.803e-2558.33Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_CYAPA1.019e-2457.89Photosystem II reaction center psb28 protein OS=Cy... [more]
PSB28_THEEB2.270e-2452.48Photosystem II reaction center psb28 protein OS=Th... [more]
PSB28_ACAM11.922e-2355.79Photosystem II reaction center psb28 protein OS=Ac... [more]
PSB28_CYAME3.279e-2354.17Photosystem II reaction center psb28 protein OS=Cy... [more]
PSB28_NOSP74.282e-2352.63Photosystem II reaction center psb28 protein OS=No... [more]
PSB28_CYACA4.282e-2354.17Photosystem II reaction center psb28 protein OS=Cy... [more]
PSB28_CYAP89.539e-2352.63Photosystem II reaction center psb28 protein OS=Cy... [more]
PSB28_ANAVT4.734e-2251.58Photosystem II reaction center psb28 protein OS=An... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00507 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00507 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623416 ID=BQ623416; Name=BQ623416; organism=Citrus sinensis; type=EST; length=697bp
GGTGCAATGGCAGCTCTGCGGTCTCTTGCATTAGCCTCTCCAATCTCACA
CTGTTGGCACCCACAATCCCGCTCTCCCTCTCTCTCTGGTATTGTAACAT
GGGCTGTGCATGGAAGTGCACAATCACCATTCAACGGCCAATCTGTACAT
ATGCCTCGTATGCGTTTGTCCCCGGTAACACGAAATTCTAAGGTATCTGG
ACCCATAACGATGGCGGTGAAACCGACAATTCAGTTCATCCAAGGAACTG
ATGAATTGACAGTTCCGGATGTGAAGCTAACAAAATCAAGAGATGGTTCA
AACGGTATGGCCATATTCAGTTTTAGCGAACCCTCCGTTTTTGACTCGTC
CGGTGAAATTGGTGATATCACCGGATTTTACATGATTGATGAGGAGGGAA
CTCTTCAATCAGTTGATGTAAGTGCCAAATTTGTCAATGGGAGACCTTCT
AGGATTGAAGCAAAGTATATCATGCGGTCTCCCCGAGAGTGGGATAGGTT
TATGAGGGTCATGGGAGCGGTATGCTAATCAGAATGGCTTGCAATTTGTC
AAGAAATGAGGCATTTTTTTTCTTCTCCTTTGCTTTGCTTTACCCTATTA
CATCTTTTGGTTTTGTGTAATTTGGGCAGGCCAATGGTGAAGGCTTTGCT
TGACAGCCATTTAAGTTTGATGCAAAACCTTATGCTCTCTTCTCTTC
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