BQ623416

Overview
NameBQ623416
Unique NameBQ623416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623416_ssr78 microsatellite BQ623416_ssr78:78..87. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2912 contig Csv1_Contig2912:69..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_ANASP (Photosystem II reaction center psb28 protein OS=Anabaena sp. (strain PCC 7120) GN=psb28 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.075e-22
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQF +G DE  +P+V+LT+SR G  G A F F+ P + D  G   DITG Y+IDEEG + + +V  KF+NGRP  +EA Y+M+S +EW+RF+R M
Sbjct:    4 IQFSRGLDEEVIPEVRLTRSRTGDTGTATFIFTNPKILDQ-GTTEDITGMYLIDEEGEIITREVKGKFINGRPEGLEAVYVMKSAQEWERFIRFM 97          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_SYNP2 (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=psb28 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.101e-22
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQF QG +E  VP ++LT+S DGS G A+FSF +P+   +     +ITG Y+IDEEG + + +V AKF +G+P  IEA+ +MRS  EWDRFMR M
Sbjct:    4 IQFSQGVNEPEVPGIRLTRSPDGSTGTAVFSFEDPAAL-AQESTDEITGMYLIDEEGEIVTREVKAKFYDGKPRIIEARLVMRSTAEWDRFMRFM 97          

HSP 2 Score: 23.8682 bits (50), Expect = 8.101e-22
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 2
Query:  515 ERYANQNGLQFVK 553
            ERYA +NGL+F K
Sbjct:   98 ERYAAENGLEFTK 110          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_TRIEI (Photosystem II reaction center psb28 protein OS=Trichodesmium erythraeum (strain IMS101) GN=psb28 PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  226 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            TIQFIQG DE   P+V+LT+SR G+ G A   F +P          +ITG YMIDEEG + S DV A+FVNG+P  +E  Y+M++ +EW+RFMR M
Sbjct:    3 TIQFIQGIDEEVTPEVRLTRSRSGNQGTATLIFEDPKALGQD-VTQEITGMYMIDEEGQITSRDVKARFVNGQPKFLEGLYVMKTKQEWERFMRFM 97          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PROM4 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9211) GN=psb28 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 45/97 (46.39%), Postives = 66/97 (68.04%), Query Frame = 1
Query:  217 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMR 507
            + P IQF +G DE  +P+++LT+S+DG  G AIF F +P    S    GDITG  +ID+EG L++ +V A+F+NG PS IEA Y  ++  +++RFMR
Sbjct:    6 INPAIQFYEGVDETAIPEIRLTRSKDGKTGQAIFVFQKPDAL-SEATTGDITGMTLIDDEGALKTREVKARFLNGEPSAIEATYTWKTESDFERFMR 101          

HSP 2 Score: 20.7866 bits (42), Expect = 1.127e-20
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 2
Query:  515 ERYANQNGLQFVKK 556
            ERYA +NGL +  K
Sbjct:  104 ERYAKKNGLGYSSK 117          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_CYAA5 (Photosystem II reaction center psb28 protein OS=Cyanothece sp. (strain ATCC 51142) GN=psb28 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.127e-20
Identity = 45/95 (47.37%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQF +G  E  VP+V+LT+++ G++G A F F  P++ D+     DITG Y++DEEG + + +V  KF+NG+P+ +EA  IM S  EWDRFMR M
Sbjct:    4 IQFSRGVSEPVVPEVRLTRAKSGNSGTATFRFESPTILDAEST-DDITGMYLVDEEGEIVTREVKGKFINGKPTSVEAILIMNSQDEWDRFMRFM 97          

HSP 2 Score: 22.3274 bits (46), Expect = 1.127e-20
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  515 ERYANQNGLQFVK 553
            ERYA +NGL F K
Sbjct:   98 ERYAQENGLGFSK 110          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_SYNPW (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain WH7803) GN=psb28 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  220 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMR 507
            K  IQF +GTDE  VPD++LT+SRDG  G A F F +P    +   +G+I G +M+DEEG L + +V+ KFVNG+PS +EA Y  ++ ++++RFMR
Sbjct:    6 KAAIQFFRGTDEPVVPDIRLTRSRDGRTGQATFIFEQPEAL-APETLGNIAGMWMVDEEGELVTREVNGKFVNGKPSALEATYTWKTEQDFERFMR 100          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_SYNY3 (Photosystem II reaction center psb28 protein OS=Synechocystis sp. (strain PCC 6803) GN=psb28 PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQF +G  E  VP+V+L+KS++G +GMA F F EP++  +     DITG Y+ID+EG + + +V  KF+NGRP+ IEA  I+ S  EWDRFMR M
Sbjct:    4 IQFSKGVAETVVPEVRLSKSKNGQSGMAKFYFLEPTIL-AKESTDDITGMYLIDDEGEIITREVKGKFINGRPTAIEATVILNSQPEWDRFMRFM 97          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PROM3 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9303) GN=psb28 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMR 507
            IQFI+G DE  VPD+KLT+S DG  G A+F F +P +       G ITG +M+DEEG L + +V+A+FVNG+PS +E  YI +S  +++RFMR
Sbjct:   10 IQFIRGVDEPVVPDIKLTRSSDGRTGRALFVFDQPEIMAPETWAG-ITGMFMLDEEGELVTREVNARFVNGQPSALEVTYIWKSEEDFERFMR 101          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_CYAP7 (Photosystem II reaction center psb28 protein OS=Cyanothece sp. (strain PCC 7424) GN=psb28 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.204e-19
Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQF +G  E  +P ++LT+SR G +G A F F  P++F +  +  ++TG Y+ID EG + S +V  KF+NG+P  IEA  IM SP EW+RFMR M
Sbjct:    4 IQFARGLVEDAIPTIRLTRSRTGDSGTATFYFESPNIF-ADEQTQEVTGMYLIDSEGEIVSREVKGKFINGKPHAIEAILIMNSPDEWERFMRFM 97          

HSP 2 Score: 22.7126 bits (47), Expect = 1.204e-19
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 2
Query:  515 ERYANQNGLQFVK 553
            ERYA ++GL+F K
Sbjct:   98 ERYAQEHGLEFTK 110          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_MICAN (Photosystem II reaction center psb28 protein OS=Microcystis aeruginosa (strain NIES-843) GN=psb28 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.204e-19
Identity = 44/95 (46.32%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQF +G  E  VPD++L++++ G  G A F F +P++     +  +ITG Y+IDEEG + +  V  KF+NG+P  IEA  I  SP EWDRFMR M
Sbjct:    4 IQFSKGLKEPVVPDIRLSRTKTGEKGSAEFYFKQPTILGDQ-QTEEITGMYLIDEEGEIVTTKVKGKFINGKPMAIEATVIFNSPAEWDRFMRFM 97          

HSP 2 Score: 23.483 bits (49), Expect = 1.204e-19
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 2
Query:  515 ERYANQNGLQFVK 553
            ERY ++NGL+F K
Sbjct:   98 ERYGSENGLEFTK 110          
The following BLAST results are available for this feature:
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PSB28_ANASP8.075e-2250.53Photosystem II reaction center psb28 protein OS=An... [more]
PSB28_SYNP28.101e-2251.58Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_TRIEI4.008e-2151.04Photosystem II reaction center psb28 protein OS=Tr... [more]
PSB28_PROM41.127e-2046.39Photosystem II reaction center psb28 protein OS=Pr... [more]
PSB28_CYAA51.127e-2047.37Photosystem II reaction center psb28 protein OS=Cy... [more]
PSB28_SYNPW2.598e-2047.92Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_SYNY33.393e-2050.53Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_PROM37.558e-2050.54Photosystem II reaction center psb28 protein OS=Pr... [more]
PSB28_CYAP71.204e-1947.37Photosystem II reaction center psb28 protein OS=Cy... [more]
PSB28_MICAN1.204e-1946.32Photosystem II reaction center psb28 protein OS=Mi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00507 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00507 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623416 ID=BQ623416; Name=BQ623416; organism=Citrus sinensis; type=EST; length=697bp
GGTGCAATGGCAGCTCTGCGGTCTCTTGCATTAGCCTCTCCAATCTCACA
CTGTTGGCACCCACAATCCCGCTCTCCCTCTCTCTCTGGTATTGTAACAT
GGGCTGTGCATGGAAGTGCACAATCACCATTCAACGGCCAATCTGTACAT
ATGCCTCGTATGCGTTTGTCCCCGGTAACACGAAATTCTAAGGTATCTGG
ACCCATAACGATGGCGGTGAAACCGACAATTCAGTTCATCCAAGGAACTG
ATGAATTGACAGTTCCGGATGTGAAGCTAACAAAATCAAGAGATGGTTCA
AACGGTATGGCCATATTCAGTTTTAGCGAACCCTCCGTTTTTGACTCGTC
CGGTGAAATTGGTGATATCACCGGATTTTACATGATTGATGAGGAGGGAA
CTCTTCAATCAGTTGATGTAAGTGCCAAATTTGTCAATGGGAGACCTTCT
AGGATTGAAGCAAAGTATATCATGCGGTCTCCCCGAGAGTGGGATAGGTT
TATGAGGGTCATGGGAGCGGTATGCTAATCAGAATGGCTTGCAATTTGTC
AAGAAATGAGGCATTTTTTTTCTTCTCCTTTGCTTTGCTTTACCCTATTA
CATCTTTTGGTTTTGTGTAATTTGGGCAGGCCAATGGTGAAGGCTTTGCT
TGACAGCCATTTAAGTTTGATGCAAAACCTTATGCTCTCTTCTCTTC
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