BQ623416

Overview
NameBQ623416
Unique NameBQ623416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623416_ssr78 microsatellite BQ623416_ssr78:78..87. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2912 contig Csv1_Contig2912:69..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PROMA (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus GN=psb28 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  226 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMR 507
            TI+F++G DE ++P+++LT+SRDG  G A F+F EP    S+ + G I G  M DEEG L++ +V A+FVNG PS +EA Y+ +S  ++ RFMR
Sbjct:    9 TIRFLEGIDETSIPEIRLTRSRDGRTGQAFFTFEEPQAL-SAVKDGSIQGMSMFDEEGELKTREVKARFVNGTPSALEATYVWKSESDFQRFMR 101          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_CYAP4 (Photosystem II reaction center psb28 protein OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=psb28 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 45/95 (47.37%), Postives = 66/95 (69.47%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQF++G +E  VPDV+LT+++DG+ G A+F F  P +        +I G YM+DEEG + + +V+AKF+NG+ + IEA Y +RS  EWDRF+R M
Sbjct:    4 IQFVRGVNEGVVPDVRLTRAKDGNTGRAVFYFDNPQLVQEGNL--EIMGMYMVDEEGEIVTREVNAKFINGKATAIEAIYTIRSAPEWDRFIRFM 96          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PROMM (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9313) GN=psb28 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMR 507
            IQF +G DE  VPD+KLT+S DG  G A+F F +P +       G ITG +MIDEEG L + +V+A+FVNG+PS +E  YI +S  +++RFMR
Sbjct:   10 IQFTRGVDEPVVPDIKLTRSSDGRTGRALFVFDQPEIMAPETWAG-ITGMFMIDEEGELVTREVNARFVNGKPSALEVTYIWKSEADFERFMR 101          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_SYNPX (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain WH8102) GN=psb28 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  220 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMR 507
            K +IQF +G DE  VPD++LT+SRDG  G A F F +P+   +   +GDITG +M+DEEG + + +++ KFVNG  S +EA Y  +S ++++RFMR
Sbjct:    3 KASIQFFRGVDEPVVPDIRLTRSRDGLTGQATFRFEQPAAI-APETMGDITGMWMVDEEGEMVTREINGKFVNGTASALEAVYSWKSVQDFERFMR 97          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_SYNSC (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain CC9605) GN=psb28 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 45/96 (46.88%), Postives = 66/96 (68.75%), Query Frame = 1
Query:  220 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMR 507
            K  IQF +G +E  VPD++LT+SRDG  G A F F +P+   +   +GDITG +M+DEEG + + +V+ KFVNG  S +EA Y  +S ++++RFMR
Sbjct:    3 KAAIQFFRGVNEPVVPDIRLTRSRDGRTGQATFRFEQPAAI-APETMGDITGMWMVDEEGEMVTREVNGKFVNGTASALEAVYSWKSEQDFERFMR 97          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PROM9 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9312) GN=psb28 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 47/109 (43.12%), Postives = 70/109 (64.22%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVMGAVC*SEWLAICQE 555
            IQF +GTDE  VP+++LT+S+DG++G A+F F +P    S  + G+ITG  MID EG + + +V  KFV+G P  +EA YI +S  ++DRFMR   +   S  L   ++
Sbjct:    9 IQFYEGTDEPVVPEIRLTRSKDGTSGQALFQFEKPQALSSITD-GEITGMRMIDAEGEILTREVKVKFVDGEPIFLEAVYIWKSTSDFDRFMRFANSYAKSNGLGYSEK 116          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_SYNS3 (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain CC9311) GN=psb28 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 49/113 (43.36%), Postives = 72/113 (63.72%), Query Frame = 1
Query:  220 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD-ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVMGAVC*SEWLAICQE 555
            K  IQF++G DE  VPD+++T+SRDG  G AIF F +P     + E+ + ITG +M+DEEG L + +V+ KFVNG+ S +EA Y  +S ++++RFMR       S  L   Q+
Sbjct:    6 KAVIQFLRGVDEPVVPDIRVTRSRDGRTGQAIFVFEQPEAL--APEVMEAITGMFMLDEEGMLVTREVNGKFVNGKASALEATYTWKSEQDFERFMRFAQRYADSSGLGYSQD 116          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PROM2 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9215) GN=psb28 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 46/109 (42.20%), Postives = 69/109 (63.30%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVMGAVC*SEWLAICQE 555
            IQF +GTDE  VP+++LT+S+DG+ G A+F F +P    S  + G+ITG  MID EG + + +V  KFV+G P  +EA YI ++  ++DRFMR   +   S  L   ++
Sbjct:    9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDSEGEILTKEVKVKFVDGEPIYLEAVYIWKNSSDFDRFMRFANSYAKSNGLGYSEK 116          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PROM0 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9301) GN=psb28 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 46/109 (42.20%), Postives = 69/109 (63.30%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVMGAVC*SEWLAICQE 555
            IQF +GTDE  VP+++LT+S+DG+ G A+F F +P    S  + G+ITG  MID EG + + +V  KFV+G P  +EA YI ++  ++DRFMR   +   S  L   ++
Sbjct:    9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDSEGEILTREVKVKFVDGEPIFLEAVYIWKNTPDFDRFMRFANSYAKSNGLGYSEK 116          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_SYNS9 (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain CC9902) GN=psb28 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 46/112 (41.07%), Postives = 67/112 (59.82%), Query Frame = 1
Query:  226 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVMGAVC*SEWLAICQEMR 561
            +IQF +G DE  VPD++LT+SRDG  G A F F +P    +    G+I G +M+DEEG + + +V+ KFVNG PS +EA Y  ++  +++RFMR       S  L   Q  +
Sbjct:    9 SIQFFRGVDEPVVPDIRLTRSRDGRTGQATFVFEQPQAL-APETFGNIGGMWMVDEEGEMVTREVNGKFVNGIPSALEATYTWKTEEDFERFMRFAQRYADSNGLGYSQNQK 119          
The following BLAST results are available for this feature:
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PSB28_PROMA1.289e-1947.87Photosystem II reaction center psb28 protein OS=Pr... [more]
PSB28_CYAP41.289e-1947.37Photosystem II reaction center psb28 protein OS=Cy... [more]
PSB28_PROMM1.684e-1950.54Photosystem II reaction center psb28 protein OS=Pr... [more]
PSB28_SYNPX2.199e-1946.88Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_SYNSC4.899e-1946.88Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_PROM96.398e-1943.12Photosystem II reaction center psb28 protein OS=Pr... [more]
PSB28_SYNS38.357e-1943.36Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_PROM21.425e-1842.20Photosystem II reaction center psb28 protein OS=Pr... [more]
PSB28_PROM03.176e-1842.20Photosystem II reaction center psb28 protein OS=Pr... [more]
PSB28_SYNS94.147e-1841.07Photosystem II reaction center psb28 protein OS=Sy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00507 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00507 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623416 ID=BQ623416; Name=BQ623416; organism=Citrus sinensis; type=EST; length=697bp
GGTGCAATGGCAGCTCTGCGGTCTCTTGCATTAGCCTCTCCAATCTCACA
CTGTTGGCACCCACAATCCCGCTCTCCCTCTCTCTCTGGTATTGTAACAT
GGGCTGTGCATGGAAGTGCACAATCACCATTCAACGGCCAATCTGTACAT
ATGCCTCGTATGCGTTTGTCCCCGGTAACACGAAATTCTAAGGTATCTGG
ACCCATAACGATGGCGGTGAAACCGACAATTCAGTTCATCCAAGGAACTG
ATGAATTGACAGTTCCGGATGTGAAGCTAACAAAATCAAGAGATGGTTCA
AACGGTATGGCCATATTCAGTTTTAGCGAACCCTCCGTTTTTGACTCGTC
CGGTGAAATTGGTGATATCACCGGATTTTACATGATTGATGAGGAGGGAA
CTCTTCAATCAGTTGATGTAAGTGCCAAATTTGTCAATGGGAGACCTTCT
AGGATTGAAGCAAAGTATATCATGCGGTCTCCCCGAGAGTGGGATAGGTT
TATGAGGGTCATGGGAGCGGTATGCTAATCAGAATGGCTTGCAATTTGTC
AAGAAATGAGGCATTTTTTTTCTTCTCCTTTGCTTTGCTTTACCCTATTA
CATCTTTTGGTTTTGTGTAATTTGGGCAGGCCAATGGTGAAGGCTTTGCT
TGACAGCCATTTAAGTTTGATGCAAAACCTTATGCTCTCTTCTCTTC
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