BQ623416
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PROMS (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain AS9601) GN=psb28 PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18 Identity = 46/109 (42.20%), Postives = 69/109 (63.30%), Query Frame = 1 Query: 229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVMGAVC*SEWLAICQE 555 IQF +GTDE VP+++LT+S+DG+ G A+F F +P S + G+ITG MID EG + + +V KFV+G P +EA YI ++ ++DRFMR + S L ++ Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDTEGEILTREVKVKFVDGEPIFLEAVYIWKNTPDFDRFMRFANSYAKSNGLGYSEK 116
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PROMP (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=psb28 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18 Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 1 Query: 229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVMGAVC*SEWLAICQE 555 IQF +GTDE VP+++LT+ DG+ G AIF F +P S + G+ITG MID EG + + +V KFV+G P +E YI ++ ++DRFMR + S L ++ Sbjct: 9 IQFYEGTDEPVVPEIRLTRGNDGTTGQAIFIFEKPQALSSVAD-GEITGMRMIDAEGEILTREVKVKFVDGEPMFLEGTYIWKTKSDFDRFMRFANSYAKSNGLGYSEK 116
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PROM5 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9515) GN=psb28 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18 Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 1 Query: 229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVMGAVC*SEWLAICQE 555 IQF +GT+E VP+++LT+ DG+ G AIF F +P S E G+ITG MID EG + + +V KFV+G P +E YI ++ ++DRFMR + S L ++ Sbjct: 9 IQFYEGTNEPVVPEIRLTRGNDGTTGQAIFIFEKPQALSSITE-GEITGMRMIDSEGEIMTREVKVKFVDGEPMYLEGTYIWKTKSDFDRFMRFANSYAKSNGLGYSEK 116
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_SYNJB (Photosystem II reaction center psb28 protein OS=Synechococcus sp. GN=psb28 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11 Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 1 Query: 226 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513 +I+F G E+ V++ KS+ G+ G AIF F D + +I G MIDEEG L + ++ AKF+NG +E Y M + EWDRF+R M Sbjct: 3 SIEFSPGIQEVPT-QVRVLKSKTGNRGSAIFRFE-----DLKSDTQNILGMRMIDEEGELTTRNIRAKFLNGEFKALEVTYDMETEAEWDRFLRFM 92
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_SYNJA (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain JA-3-3Ab) GN=psb28 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11 Identity = 39/96 (40.62%), Postives = 52/96 (54.17%), Query Frame = 1 Query: 226 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513 TI+F G E+ V+L KS+ G G AIF F E + I G MIDEEG L + ++ AKF+NG +E Y M + EW+RF+R M Sbjct: 3 TIEFSPGIPEVPT-QVRLLKSKTGKRGSAIFRFEE-----LKSDTQSILGMRMIDEEGELTTRNIKAKFLNGEFKALEVIYDMETEAEWERFLRFM 92 The following BLAST results are available for this feature:
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 45
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623416 ID=BQ623416; Name=BQ623416; organism=Citrus sinensis; type=EST; length=697bpback to top |