BQ623416

Overview
NameBQ623416
Unique NameBQ623416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623416_ssr78 microsatellite BQ623416_ssr78:78..87. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2912 contig Csv1_Contig2912:69..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PROMS (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain AS9601) GN=psb28 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 46/109 (42.20%), Postives = 69/109 (63.30%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVMGAVC*SEWLAICQE 555
            IQF +GTDE  VP+++LT+S+DG+ G A+F F +P    S  + G+ITG  MID EG + + +V  KFV+G P  +EA YI ++  ++DRFMR   +   S  L   ++
Sbjct:    9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDTEGEILTREVKVKFVDGEPIFLEAVYIWKNTPDFDRFMRFANSYAKSNGLGYSEK 116          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PROMP (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=psb28 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVMGAVC*SEWLAICQE 555
            IQF +GTDE  VP+++LT+  DG+ G AIF F +P    S  + G+ITG  MID EG + + +V  KFV+G P  +E  YI ++  ++DRFMR   +   S  L   ++
Sbjct:    9 IQFYEGTDEPVVPEIRLTRGNDGTTGQAIFIFEKPQALSSVAD-GEITGMRMIDAEGEILTREVKVKFVDGEPMFLEGTYIWKTKSDFDRFMRFANSYAKSNGLGYSEK 116          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PROM5 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9515) GN=psb28 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVMGAVC*SEWLAICQE 555
            IQF +GT+E  VP+++LT+  DG+ G AIF F +P    S  E G+ITG  MID EG + + +V  KFV+G P  +E  YI ++  ++DRFMR   +   S  L   ++
Sbjct:    9 IQFYEGTNEPVVPEIRLTRGNDGTTGQAIFIFEKPQALSSITE-GEITGMRMIDSEGEIMTREVKVKFVDGEPMYLEGTYIWKTKSDFDRFMRFANSYAKSNGLGYSEK 116          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_SYNJB (Photosystem II reaction center psb28 protein OS=Synechococcus sp. GN=psb28 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 1
Query:  226 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            +I+F  G  E+    V++ KS+ G+ G AIF F      D   +  +I G  MIDEEG L + ++ AKF+NG    +E  Y M +  EWDRF+R M
Sbjct:    3 SIEFSPGIQEVPT-QVRVLKSKTGNRGSAIFRFE-----DLKSDTQNILGMRMIDEEGELTTRNIRAKFLNGEFKALEVTYDMETEAEWDRFLRFM 92          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_SYNJA (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain JA-3-3Ab) GN=psb28 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 39/96 (40.62%), Postives = 52/96 (54.17%), Query Frame = 1
Query:  226 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            TI+F  G  E+    V+L KS+ G  G AIF F E        +   I G  MIDEEG L + ++ AKF+NG    +E  Y M +  EW+RF+R M
Sbjct:    3 TIEFSPGIPEVPT-QVRLLKSKTGKRGSAIFRFEE-----LKSDTQSILGMRMIDEEGELTTRNIKAKFLNGEFKALEVIYDMETEAEWERFLRFM 92          
The following BLAST results are available for this feature:
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PSB28_PROMS4.147e-1842.20Photosystem II reaction center psb28 protein OS=Pr... [more]
PSB28_PROMP9.239e-1841.28Photosystem II reaction center psb28 protein OS=Pr... [more]
PSB28_PROM59.239e-1841.28Photosystem II reaction center psb28 protein OS=Pr... [more]
PSB28_SYNJB4.910e-1139.58Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_SYNJA8.376e-1140.63Photosystem II reaction center psb28 protein OS=Sy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00507 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00507 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623416 ID=BQ623416; Name=BQ623416; organism=Citrus sinensis; type=EST; length=697bp
GGTGCAATGGCAGCTCTGCGGTCTCTTGCATTAGCCTCTCCAATCTCACA
CTGTTGGCACCCACAATCCCGCTCTCCCTCTCTCTCTGGTATTGTAACAT
GGGCTGTGCATGGAAGTGCACAATCACCATTCAACGGCCAATCTGTACAT
ATGCCTCGTATGCGTTTGTCCCCGGTAACACGAAATTCTAAGGTATCTGG
ACCCATAACGATGGCGGTGAAACCGACAATTCAGTTCATCCAAGGAACTG
ATGAATTGACAGTTCCGGATGTGAAGCTAACAAAATCAAGAGATGGTTCA
AACGGTATGGCCATATTCAGTTTTAGCGAACCCTCCGTTTTTGACTCGTC
CGGTGAAATTGGTGATATCACCGGATTTTACATGATTGATGAGGAGGGAA
CTCTTCAATCAGTTGATGTAAGTGCCAAATTTGTCAATGGGAGACCTTCT
AGGATTGAAGCAAAGTATATCATGCGGTCTCCCCGAGAGTGGGATAGGTT
TATGAGGGTCATGGGAGCGGTATGCTAATCAGAATGGCTTGCAATTTGTC
AAGAAATGAGGCATTTTTTTTCTTCTCCTTTGCTTTGCTTTACCCTATTA
CATCTTTTGGTTTTGTGTAATTTGGGCAGGCCAATGGTGAAGGCTTTGCT
TGACAGCCATTTAAGTTTGATGCAAAACCTTATGCTCTCTTCTCTTC
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