BQ623418

Overview
NameBQ623418
Unique NameBQ623418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length435
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig642 contig Csv1_Contig642:664..1098. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623418 vs. ExPASy Swiss-Prot
Match: FRMA_HAEIN (S-(hydroxymethyl)glutathione dehydrogenase OS=Haemophilus influenzae GN=frmA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.784e-40
Identity = 77/140 (55.00%), Postives = 101/140 (72.14%), Query Frame = 1
Query:    4 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIGG 423
            +VS+AKI+P+A  ++VCLLGCGV TG+GAV NTAKV+ G  VAVFGLG +              R+I ID +P KF+ AK FG T+ +NP D+DKPI+ VL+D+   G+D++FECIGNV+VMR ALE  H+GWG S+I G
Sbjct:  158 EVSLAKINPEANHEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPAKFELAKQFGATDCLNPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRQALESAHRGWGQSIIIG 297          
BLAST of BQ623418 vs. ExPASy Swiss-Prot
Match: ADH2_HORVU (Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 6.454e-40
Identity = 74/137 (54.01%), Postives = 94/137 (68.61%), Query Frame = 1
Query:    1 HDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTS 411
            H   VAKIDP+APLDKVCLL CG+ TGLGA  N  K + G  VA+FGLG V             SR+IG+D++P K ++AK FG T+FVNPKDH KP+Q+V+V++TDGGV+ + EC GN   M +A EC H GWG +
Sbjct:  156 HVGCVAKIDPEAPLDKVCLLSCGISTGLGATLNVTKPKKGMTVAIFGLGAVGLAAMEGARMSGASRIIGVDLNPAKHEQAKKFGCTDFVNPKDHTKPVQEVIVEMTDGGVNRAVECTGNADAMISAFECVHDGWGVA 292          
BLAST of BQ623418 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSJ (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=ADH2 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 1.878e-39
Identity = 71/141 (50.35%), Postives = 97/141 (68.79%), Query Frame = 1
Query:    1 HDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIGG 423
            H   +AKI+P+APLDKVC+L CG  TG GA  N AK + G  VA+FGLG V             SR+IG+D++P KF++AK FG T+FVNPKDH KP+ +VL+++T+GG+D + EC GN++ M +  EC H GWG +V+ G
Sbjct:  156 HVGCLAKINPEAPLDKVCILSCGFSTGFGATVNVAKPKKGQTVAIFGLGAVGLAAMEGARLSGASRIIGVDLNPAKFEQAKKFGCTDFVNPKDHSKPVHEVLIEMTNGGLDRAVECTGNINAMISCFECVHDGWGVAVLVG 296          
BLAST of BQ623418 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSI (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. indica GN=ADH2 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.878e-39
Identity = 71/141 (50.35%), Postives = 97/141 (68.79%), Query Frame = 1
Query:    1 HDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIGG 423
            H   +AKI+P+APLDKVC+L CG  TG GA  N AK + G  VA+FGLG V             SR+IG+D++P KF++AK FG T+FVNPKDH KP+ +VL+++T+GG+D + EC GN++ M +  EC H GWG +V+ G
Sbjct:  156 HVGCLAKINPEAPLDKVCILSCGFSTGFGATVNVAKPKKGQTVAIFGLGAVGLAAMEGARLSGASRIIGVDLNPAKFEQAKKFGCTDFVNPKDHSKPVHEVLIEMTNGGLDRAVECTGNINAMISCFECVHDGWGVAVLVG 296          
BLAST of BQ623418 vs. ExPASy Swiss-Prot
Match: ADH_MALDO (Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 3.203e-39
Identity = 76/141 (53.90%), Postives = 95/141 (67.38%), Query Frame = 1
Query:    1 HDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIGG 423
            H   +AKI+P APLDKVCLL CG+ TGLGA  N AK + GS VAVFGLG V             SR+IG+D+   +F+ AK FGVTEFVNPK H+KP+Q+V+ +LT+ GVD S EC G+   M +A EC H GWG +V+ G
Sbjct:  157 HVGCLAKINPSAPLDKVCLLSCGISTGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARLSGASRIIGVDLHSDRFEEAKKFGVTEFVNPKAHEKPVQEVIAELTNRGVDRSIECTGSTEAMISAFECVHDGWGVAVLVG 297          
BLAST of BQ623418 vs. ExPASy Swiss-Prot
Match: ADH1_ALLMI (Alcohol dehydrogenase 1 OS=Alligator mississippiensis PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.541e-38
Identity = 79/141 (56.03%), Postives = 93/141 (65.96%), Query Frame = 1
Query:    1 HDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIGG 423
            H+ +VA+ID  APL+KVCL+GCG  TG GA    AKVEPGS  AVFGLG V             SR+IGIDI+  KF +AK  G TE +NP D  KPIQ+VL ++T GGVDYSFE IG +  M AAL CC   +GTSVI G
Sbjct:  153 HETAVARIDAAAPLEKVCLIGCGFSTGYGAAVKDAKVEPGSTCAVFGLGGVGLSTIMGCKAAGASRIIGIDINKDKFAKAKELGATECINPLDCKKPIQEVLSEMTGGGVDYSFEVIGRIDTMTAALACCQDNYGTSVIVG 293          
BLAST of BQ623418 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 4.625e-38
Identity = 73/140 (52.14%), Postives = 95/140 (67.86%), Query Frame = 1
Query:    4 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIGG 423
            D+SV  I+  APLD VCLLGCG+ TG GA   TA ++ G  VAVFGLG+V              R+ GID++P+K + A +FG T+F+NP D   PIQ VL+  TDGG+D++F+C GNV VMR+ALE CHKGWG S++ G
Sbjct:  159 DISVVAIERLAPLDSVCLLGCGITTGYGAATITADIKEGDSVAVFGLGSVGLAVIQGAVKKRAGRIFGIDVNPEKKNWAMSFGATDFINPNDLQSPIQDVLIHETDGGLDWTFDCTGNVHVMRSALEACHKGWGQSIVIG 298          
BLAST of BQ623418 vs. ExPASy Swiss-Prot
Match: ADH1_NAJNA (Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.346e-37
Identity = 80/142 (56.34%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    1 HDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIGG 423
            H+ SV KIDP APL+KVCL+GCG  TG GA   TAKVEPGSI AVFGLG V             SR+IG+DI+  KF +AK  G TE +NP D  KPI +VL DLT G GVDYSFE IG    M +A   CH+  GTSV+ G
Sbjct:  153 HENSVVKIDPSAPLEKVCLIGCGFSTGYGAAMQTAKVEPGSICAVFGLGGVGLSVVMGCKAAGASRIIGVDINKDKFAKAKEMGATECINPLDFKKPINEVLFDLTGGEGVDYSFEVIGRTETMISAFTSCHQNLGTSVVVG 294          
BLAST of BQ623418 vs. ExPASy Swiss-Prot
Match: ADH1B_UROHA (Alcohol dehydrogenase 1B OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.758e-37
Identity = 80/139 (57.55%), Postives = 93/139 (66.91%), Query Frame = 1
Query:   10 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIGG 423
            SV KID  APL+KVCL+GCG  TG GA  N+AKV+PGS  AVFGLG V             SR+IGIDI+ +KF +AK  G TE VNP D+ KPI +VL D+TDG GV+YSFE IG    M AAL  CH  +GTSVI G
Sbjct:  156 SVVKIDASAPLEKVCLIGCGFSTGYGAAINSAKVQPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINKEKFPKAKELGATECVNPLDYKKPINEVLFDMTDGEGVEYSFEVIGRTDTMTAALASCHNNYGTSVIVG 294          
BLAST of BQ623418 vs. ExPASy Swiss-Prot
Match: ADH1A_UROHA (Alcohol dehydrogenase 1A OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.758e-37
Identity = 81/142 (57.04%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    1 HDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIGG 423
            H+ SV KID  APL+KVCL+GCG  TG GA   TAKVEPGS  AVFGLG V             SR+IG+DI+  KF +AK  G TE VNP D+ KPI +VL DLT G GVDYSFE IG    M AAL  CH  +GTS+I G
Sbjct:  153 HENSVVKIDAAAPLEKVCLIGCGFSTGYGAAVETAKVEPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGVDINKDKFPKAKEMGATECVNPLDYKKPINEVLFDLTGGEGVDYSFEVIGRTDTMTAALASCHMDYGTSIIVG 294          
The following BLAST results are available for this feature:
BLAST of BQ623418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
FRMA_HAEIN3.784e-4055.00S-(hydroxymethyl)glutathione dehydrogenase OS=Haem... [more]
ADH2_HORVU6.454e-4054.01Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2... [more]
ADH2_ORYSJ1.878e-3950.35Alcohol dehydrogenase 2 OS=Oryza sativa subsp. jap... [more]
ADH2_ORYSI1.878e-3950.35Alcohol dehydrogenase 2 OS=Oryza sativa subsp. ind... [more]
ADH_MALDO3.203e-3953.90Alcohol dehydrogenase OS=Malus domestica GN=ADH PE... [more]
ADH1_ALLMI3.541e-3856.03Alcohol dehydrogenase 1 OS=Alligator mississippien... [more]
FADH2_SCHPO4.625e-3852.14Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADH1_NAJNA1.346e-3756.34Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1[more]
ADH1B_UROHA1.758e-3757.55Alcohol dehydrogenase 1B OS=Uromastyx hardwickii P... [more]
ADH1A_UROHA1.758e-3757.04Alcohol dehydrogenase 1A OS=Uromastyx hardwickii P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00509 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00509 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623418 ID=BQ623418; Name=BQ623418; organism=Citrus sinensis; type=EST; length=435bp
CATGATGTTAGTGTTGCAAAGATTGACCCACAAGCTCCTTTGGACAAAGT
ATGCCTTCTTGGCTGTGGTGTTCCTACTGGTCTTGGAGCAGTTTGGAACA
CTGCAAAAGTAGAGCCGGGTTCTATAGTTGCTGTTTTTGGCCTTGGGACT
GTTGGCCTTGCTGTGGCAGAGGGTGCAAAGGCAGCTGGAGCTTCACGTGT
TATTGGTATAGATATTGACCCGAAAAAGTTTGATAGAGCAAAGAATTTTG
GAGTTACTGAATTTGTAAATCCCAAGGACCATGACAAACCCATTCAGCAG
GTCCTTGTCGATCTCACGGATGGTGGTGTTGACTATAGTTTTGAATGCAT
TGGCAATGTCTCTGTGATGAGGGCAGCTTTGGAATGCTGTCACAAGGGCT
GGGGAACATCAGTTATTGGTGGGTGTTGCTGCATC
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