BQ623422

Overview
NameBQ623422
Unique NameBQ623422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4143 contig Csv1_Contig4143:177..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623422 vs. ExPASy Swiss-Prot
Match: APX2_ARATH (L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis thaliana GN=APX2 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 6.919e-16
Identity = 40/69 (57.97%), Postives = 47/69 (68.12%), Query Frame = 3
Query:   72 SWTVQWLKFDNSYFKDIKERRDEDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSNLG 278
            +WT   L FDNSYFK+I     E LL LPTD  L +DP F  + EKYA D++AFF+DY EAH KLS LG
Sbjct:  178 AWTPNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELG 246          
BLAST of BQ623422 vs. ExPASy Swiss-Prot
Match: APX1_ARATH (L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis thaliana GN=APX1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 7.650e-15
Identity = 42/79 (53.16%), Postives = 50/79 (63.29%), Query Frame = 3
Query:   42 KDGPGAPGGQSWTVQWLKFDNSYFKDIKERRDEDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSNLG 278
            KD  G  G  +WT   L FDNSYFK++     E LL L +D  L +DP F+   EKYA D++AFF DYAEAH KLS LG
Sbjct:  170 KDRSGFEG--AWTSNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELG 246          
BLAST of BQ623422 vs. ExPASy Swiss-Prot
Match: APX2_ORYSJ (L-ascorbate peroxidase 2, cytosolic OS=Oryza sativa subsp. japonica GN=APX2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 3
Query:   72 SWTVQWLKFDNSYFKDIKERRDEDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSNLG 278
            +WT   L FDNSYF ++     E LL LP+D  L  DP+F+   EKYA D++AFF DYAEAH KLS LG
Sbjct:  179 AWTSNPLIFDNSYFTELVSGEKEGLLQLPSDKALMADPAFRPLVEKYAADEDAFFADYAEAHLKLSELG 247          
BLAST of BQ623422 vs. ExPASy Swiss-Prot
Match: APX1_ORYSJ (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. japonica GN=APX1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 3
Query:   75 WTVQWLKFDNSYFKDIKERRDEDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSNLG 278
            WT   L+FDNSYF ++     E LL LP+D  L  DP+F+   EKYA D++AFF+DY EAH KLS LG
Sbjct:  179 WTRNPLQFDNSYFTELLSGDKEGLLQLPSDKALLSDPAFRPLVEKYAADEKAFFEDYKEAHLKLSELG 246          
BLAST of BQ623422 vs. ExPASy Swiss-Prot
Match: APX1_ORYSI (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. indica GN=APX1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.458e-14
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 3
Query:   75 WTVQWLKFDNSYFKDIKERRDEDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSNLG 278
            WT   L+FDNSYF ++     E LL LP+D  L  DP+F    EKYA D++AFF+DY EAH KLS LG
Sbjct:  179 WTRNPLQFDNSYFTELLSGDKEGLLQLPSDKALLSDPAFCPLVEKYAADEKAFFEDYKEAHLKLSELG 246          
BLAST of BQ623422 vs. ExPASy Swiss-Prot
Match: APX5_ARATH (L-ascorbate peroxidase 5, peroxisomal OS=Arabidopsis thaliana GN=APX5 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 9.352e-13
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 3
Query:   75 WTVQWLKFDNSYFKDIKERRDEDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSNLGAKFDPPEGI 305
            WT   LKFDNSYF ++ +     LL L TD  L +DP F  + + YA+D++ FFK YA +H KLS LG  F+PP  I
Sbjct:  174 WTQDPLKFDNSYFVELLKGETPGLLQLKTDKALLDDPKFHPFVKLYAKDEDMFFKAYAISHKKLSELG--FNPPRRI 248          
BLAST of BQ623422 vs. ExPASy Swiss-Prot
Match: APX1_PEA (L-ascorbate peroxidase, cytosolic OS=Pisum sativum GN=APX1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.083e-12
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 3
Query:   75 WTVQWLKFDNSYFKDIKERRDEDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSNLG 278
            WT   L FDNSYF ++     + LL LP+D  L  D  F+   EKYA D++ FF DYAEAH KLS LG
Sbjct:  179 WTSNPLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSELG 246          
BLAST of BQ623422 vs. ExPASy Swiss-Prot
Match: CCPR2_CRYNE (Putative heme-binding peroxidase OS=Cryptococcus neoformans GN=CNE03890 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 45/106 (42.45%), Postives = 52/106 (49.06%), Query Frame = 3
Query:   45 DGPGAPGGQSWTVQWLKFDNSYFKDIKERRDEDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSNLG-----------AKFDPPEGIVLDDGAAP 329
            DGP       W V   +F N YFK +       L++LPTD  L EDPSF+ + EKYA DQ  FFKD+A A  KL  LG           AK    EG  LD  A P
Sbjct:  182 DGP-------WVVNPTRFSNQYFKLLLP--GTRLMMLPTDMALIEDPSFRPWVEKYAADQNLFFKDFANAFGKLIELGVDRDDTGFARLAKKAAEEGKPLDKTAPP 278          
The following BLAST results are available for this feature:
BLAST of BQ623422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
APX2_ARATH6.919e-1657.97L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis... [more]
APX1_ARATH7.650e-1553.16L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis... [more]
APX2_ORYSJ9.991e-1555.07L-ascorbate peroxidase 2, cytosolic OS=Oryza sativ... [more]
APX1_ORYSJ2.226e-1454.41L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX1_ORYSI8.458e-1454.41L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX5_ARATH9.352e-1348.05L-ascorbate peroxidase 5, peroxisomal OS=Arabidops... [more]
APX1_PEA2.083e-1251.47L-ascorbate peroxidase, cytosolic OS=Pisum sativum... [more]
CCPR2_CRYNE2.303e-1142.45Putative heme-binding peroxidase OS=Cryptococcus n... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00513 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00513 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623422 ID=BQ623422; Name=BQ623422; organism=Citrus sinensis; type=EST; length=548bp
CTGAACGAAGTGGTTGGGGCAAGCCAGAAACAAAGTACACGAAAGATGGA
CCAGGAGCACCTGGTGGGCAGTCCTGGACAGTACAATGGTTGAAATTTGA
CAACTCCTACTTCAAGGATATTAAAGAAAGAAGGGACGAAGATTTACTCG
TGCTGCCTACTGATGCTGTTCTTTTTGAAGATCCTTCATTCAAGGTTTAT
GCTGAGAAATATGCTGAGGATCAGGAAGCATTCTTTAAGGATTATGCTGA
AGCCCATGCCAAACTCAGCAACCTTGGGGCAAAATTTGACCCTCCTGAGG
GTATCGTGCTAGATGATGGTGCTGCTCCAGAGAAGTTTGTAGCAGCCAAG
TATTCGTCCGGAAAGGACTGAAAAAACAAGTAACTTTGTTTTCTTGTGCC
GTATGTTATAATAATACAAGATGAAGGTTTTTTGAAATCCTGTGTGTGCT
TCACACCTAAAACTTGGAAGTCTAAGTGAAGGTGAAAGAATAAAATTCAA
TTAGTGTTGGCTATTTGAATTGCAGAGTGAGCTGTCAGAGGCTATGAA
back to top