BQ623424

Overview
NameBQ623424
Unique NameBQ623424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.076e-23
Identity = 80/205 (39.02%), Postives = 108/205 (52.68%), Query Frame = 1
Query:    7 PGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 591
            PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP  NN
Sbjct:   74 PGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVTPELLAKNGVKFGEAV--WFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG----GPLGE---VEDPIYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNN 253          
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.076e-23
Identity = 80/206 (38.83%), Postives = 110/206 (53.40%), Query Frame = 1
Query:    7 PGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYL-GGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 591
            PGDYG+D   +S DPE    F + + L   EVI+ R+AMLGA+G + PE+L K GL   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G++G     G +  L GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct:   75 PGDYGWDTAAVSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAKNGLKFGEAV--WFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYR----VGGGTLGE----GLDPLLPGGAFDPL----------GLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 254          
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.625e-23
Identity = 78/205 (38.05%), Postives = 110/205 (53.66%), Query Frame = 1
Query:    7 PGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 591
            PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +  ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP ++L DH+ADPVNNN
Sbjct:   75 PGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAG--WFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAG----GPLGE---IVDPLYPGGSFDPL----------GLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNN 254          
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.625e-23
Identity = 79/205 (38.54%), Postives = 109/205 (53.17%), Query Frame = 1
Query:    7 PGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 591
            PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +  ++  + K+KE+KNGRLAM ++ G+FV  +VTG GP +NL DHLADPVNNN
Sbjct:   37 PGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNN 216          
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.889e-23
Identity = 82/210 (39.05%), Postives = 107/210 (50.95%), Query Frame = 1
Query:    7 PGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 603
            PGDYG+D  GLS DP+    + E       E+I+ R+A+LGA+G + PE+L + AG+  Q     WF+ G  I   G  NY  +   +          +++ LMG AE  R    AN GS G    L    Y GG  DP               D  +  + K+KE+KNGRLAM + LG+FVQ +VTG GP QNL DHLADP  N    S
Sbjct:   59 PGDYGWDTAGLSADPQTFARYREI------ELIHARWALLGALGILTPELLSQYAGV--QFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR----ANGGSEGFLDDLD-TLYPGGPFDPL----------GLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFAS 245          
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.030e-22
Identity = 76/204 (37.25%), Postives = 105/204 (51.47%), Query Frame = 1
Query:    7 PGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 591
            PGDYG+D  GLS    T  F + + L   EVI+ R+ MLGA+G + PE+  + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G         Y GGS DP               D ++  + ++KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   75 PGDYGWDTAGLSADPAT--FAKNRKL---EVIHCRWTMLGALGCVFPELFARNGVKFGEAV--WFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVID---PLYPGGSFDPL----------GLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.757e-22
Identity = 77/205 (37.56%), Postives = 104/205 (50.73%), Query Frame = 1
Query:    7 PGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 591
            PGDYG+D  GLS DPE    F + + L   EVI+GR+AMLGA+G I PE+L K   +  +  + WF+ G  I   G  +Y  +P  +           ++ LMG  E  R      PG               G G+  Y             D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct:   72 PGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPV-WFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253          
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.295e-22
Identity = 77/206 (37.38%), Postives = 101/206 (49.03%), Query Frame = 1
Query:    7 PGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 591
            PGDYG+D  GLS DPE    + E       E+I+ R  +LGA+G + PE+L     I    A  WF+ G  I   G  NY  +P  +          +++ LMG  E  R     N G  G     G +  Y G + DP               D  +  + K+KE+KNGRLAM A LG+FVQ +VTG GP +NL DHLA+P  NN
Sbjct:   81 PGDYGWDTAGLSADPETFKRYREL------ELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR----VNGGPAGE----GLDPLYPGEAFDPL----------GLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENN 262          
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.295e-22
Identity = 77/205 (37.56%), Postives = 107/205 (52.20%), Query Frame = 1
Query:    7 PGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 591
            PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+  + G+   E    W + G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +D ++  + K+KE KNGRLAM ++ G+F+Q +VTG GP +NL DHL DPVNNN
Sbjct:   76 PGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELFARNGVKFGEAV--WLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAG----GPLG---VVVDPLYPGGSFDPL----------GLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNN 255          
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.915e-22
Identity = 79/208 (37.98%), Postives = 107/208 (51.44%), Query Frame = 1
Query:    7 PGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKY--LGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 591
            PGDYG+D  GLS DPE    F   + L   EVI+GR+AMLGA+G + PE+L K  G+  +E    WF+ G  I   G  +Y  +P  +           ++ LMG  E  R       G  G   + G + +  LG + DP                  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPV NN
Sbjct:   75 PGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGE-GNDLYPGGQYFDPLGLADDPV-----------------TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 256          
The following BLAST results are available for this feature:
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB23_POLMU2.076e-2339.02Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_PINTH2.076e-2338.83Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_WHEAT4.625e-2338.05Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA4.625e-2338.54Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_DUNTE7.889e-2339.05Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PETSP1.030e-2237.25Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_SOLLC1.757e-2237.56Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_DUNSA2.295e-2237.38Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PETSP2.295e-2237.56Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_HORVU3.915e-2237.98Chlorophyll a-b binding protein of LHCII type III,... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00515 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00515 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623424 ID=BQ623424; Name=BQ623424; organism=Citrus sinensis; type=EST; length=632bp
AGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGACCCTGA
AGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCGAGGTCA
TCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCACCGGAG
ATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCCTGGTT
CCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAGACC
CTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCGAGCAC
CGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAATACTT
CCTCGGATTCGAGAAATACTTGGGAGGATCCGGCGATCCGGCTTACCCTG
GAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGAGAAGTCAATG
AAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATTGGCAATGTTGGC
AATCTTGGGTTACTTTGTTCAAGGTCTTGTTACAGGAGTTGGGCCTTACC
AGAACCTATTGGATCACTTGGCTGATCCTGTAAACAACAATGTTTTGACT
AGCCTCAAGTTTCACTGAGAGAGAAATTTCTT
back to top