BQ623424

Overview
NameBQ623424
Unique NameBQ623424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9230 contig Csv1_Contig9230:314..945. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.694e-14
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:  367 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 591
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  189 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.142e-13
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query:  367 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 591
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255          
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.142e-13
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query:  367 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 591
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255          
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.491e-13
Identity = 62/189 (32.80%), Postives = 90/189 (47.62%), Query Frame = 1
Query:    1 SLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQD----------WANPGSMGRQYF---LGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 522
            SLPGD+GFDPLGL  DP     F+  KW    E+I+GR+AML  +G      +G+A      T + WF+ G  P A   +++     TL   ++ LMG+ E +R+ D          WA P S   + F    G + Y GG                   D   ++  KL E+K+ RLAMLA+L ++ +
Sbjct:   79 SLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMLAVLGI----FVGQAW-----TGIPWFEAGADPGAVAPFSFG----TLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFE 248          
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.322e-13
Identity = 60/189 (31.75%), Postives = 90/189 (47.62%), Query Frame = 1
Query:    1 SLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQD----------WANPGSMGRQYFLGF---EKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 522
            SLPGDYGFDPLGL  DP     F+  KW    E+I+GR+AM   +G      +G+A      + + WF+ G  P A   +++     TL   ++ LMG+ E +R+ D          WA P S   + F  F   + Y GG                   D + ++  K+ E+K+ RLAMLA+L ++ +
Sbjct:   74 SLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----TLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFE 243          
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.666e-13
Identity = 68/203 (33.50%), Postives = 85/203 (41.87%), Query Frame = 1
Query:    7 PGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN--PGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 606
            P D GFDPL L+ DP+          +   EV +GR AML  VG I PE+LGK          AWF+ G            D   L  + MA+    E+ R Q   N   G + R Y  GF        DP                       +  EVKNGRLA+ A+ G   Q L TG  P  NL  HLA+P+  N+ T+L
Sbjct:  205 PADRGFDPLNLAADPDVYAR------MRVAEVFHGRLAMLCTVGCIVPELLGKG---------AWFEAGDS---------VDGLKLGFITMAIAAPTEYWRGQGGFNWQKGELDRSY-PGF--------DPLNLTTDYT---------------RAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGANITTNL 359          
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12
Identity = 59/189 (31.22%), Postives = 90/189 (47.62%), Query Frame = 1
Query:    1 SLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQ----------DWANPGSMGRQYFLGF---EKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 522
            SLPGD+GFDPLGL  DP     F+  KW    E+I+GR+AM   +G      +G+A      + + WF+ G  P A   +++     +L   ++ LMG+ E +R+           DWA P S   + F  F   + Y GG                   D + ++  KL E+K+ RLAMLA+L ++ +
Sbjct:   74 SLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----SLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFE 243          
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12
Identity = 55/158 (34.81%), Postives = 77/158 (48.73%), Query Frame = 1
Query:  148 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 591
            E+L K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G     G +  Y G + DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct:    1 ELLVKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYR----VGGGPLGE----GLDPLYPGDAFDPL----------GLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 138          
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 71/243 (29.22%), Postives = 100/243 (41.15%), Query Frame = 1
Query:    1 SLPGDYGFDPLGLSDPEGTGGF-------------------------------IEPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG-FEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 597
            SL GDYGFDP GL  P     F                                +P    +G       E+I+GR+AML  +GA++ E L         T + W   G +      +Y   P      TL  +E+ ++G+ E   FQ  A   S  R Y  G F   LG + DP                EK+ +  +L E+K+ RLAM+A LG+ VQ   TG GP  N   HL+DP++  ++
Sbjct:   71 SLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL---------TGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIE---FQRNAELDSEKRLYPGGKFFDPLGLAADP----------------EKTAQ-LQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTII 284          
The following BLAST results are available for this feature:
BLAST of BQ623424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB2A_SOLLC6.694e-1450.67Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC1.142e-1349.33Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.142e-1349.33Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB4_SPIOL1.491e-1332.80Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC3.322e-1331.75Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
LH18_EUGGR5.666e-1333.50Light-harvesting complex I LH38 proteins (Fragment... [more]
CB4B_SOLLC1.262e-1231.22Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB22_PINSY1.649e-1234.81Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB4A_ARATH2.153e-1229.22Chlorophyll a-b binding protein CP29.1, chloroplas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00515 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00515 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623424 ID=BQ623424; Name=BQ623424; organism=Citrus sinensis; type=EST; length=632bp
AGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGACCCTGA
AGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCGAGGTCA
TCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCACCGGAG
ATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCCTGGTT
CCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAGACC
CTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCGAGCAC
CGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAATACTT
CCTCGGATTCGAGAAATACTTGGGAGGATCCGGCGATCCGGCTTACCCTG
GAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGAGAAGTCAATG
AAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATTGGCAATGTTGGC
AATCTTGGGTTACTTTGTTCAAGGTCTTGTTACAGGAGTTGGGCCTTACC
AGAACCTATTGGATCACTTGGCTGATCCTGTAAACAACAATGTTTTGACT
AGCCTCAAGTTTCACTGAGAGAGAAATTTCTT
back to top