BQ623426

Overview
NameBQ623426
Unique NameBQ623426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.775e-20
Identity = 48/129 (37.21%), Postives = 75/129 (58.14%), Query Frame = 1
Query:  184 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQA 570
            KR+ +EL  L        SA P ++++F W  TI G + + Y    + +++ FP  YP+  P V F T  +HPN+++ G+ICLDILKE+WS    +  +LLSI SLL +P + + L    A ++K+  A
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.775e-20
Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  178 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDP 513
            + K ++ ELK LQ++P        V E D+++W+  I GP ++ Y GG F   I FP DYP+ PP   F TK++HPNI  NG +C+ IL              E+W+P   +  +LLS+ SLL +P
Sbjct:    9 SQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEP 134          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.775e-20
Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  178 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDP 513
            + K ++ ELK LQ++P        V E D+++W+  I GP ++ Y GG F   I FP DYP+ PP   F TK++HPNI  NG +C+ IL              E+W+P   +  +LLS+ SLL +P
Sbjct:    9 SQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEP 134          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.775e-20
Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  178 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDP 513
            + K ++ ELK LQ++P        V E D+++W+  I GP ++ Y GG F   I FP DYP+ PP   F TK++HPNI  NG +C+ IL              E+W+P   +  +LLS+ SLL +P
Sbjct:    9 SQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEP 134          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBE2S_DROYA (Ubiquitin-conjugating enzyme E2 S OS=Drosophila yakuba GN=GE15576 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.156e-19
Identity = 48/123 (39.02%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  184 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHM 552
            +++++EL++++  PP          D+   QA I GP+ +PYA GVF V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  P   + L  E   M
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKM 139          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBE2S_DROER (Ubiquitin-conjugating enzyme E2 S OS=Drosophila erecta GN=GG18165 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.156e-19
Identity = 48/123 (39.02%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  184 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHM 552
            +++++EL++++  PP          D+   QA I GP+ +PYA GVF V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  P   + L  E   M
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKM 139          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.156e-19
Identity = 48/120 (40.00%), Postives = 69/120 (57.50%), Query Frame = 1
Query:  196 KELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDP 513
            K+LKDL K P    SAG V E ++F W  TI+GP D+ Y GG F   + FP +YP  PP V F + ++HPN+  +G +C+ IL              E+W+P  T+  ++LSI S+L+ P
Sbjct:   11 KQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGP 130          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBE2S_DROAN (Ubiquitin-conjugating enzyme E2 S OS=Drosophila ananassae GN=GF21161 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.509e-19
Identity = 47/123 (38.21%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  184 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHM 552
            +++++EL++++  PP          D+   QA I GP+ +PYA G+F V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  P   + L  E   M
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKM 139          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.509e-19
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 1
Query:  184 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQA 570
            KR+ +EL  L        SA P ++++F W  TI G + + Y    + +++ FP  YP+  P V F T  +HPN+++ G+ICLDILK++WS    +  +LLSI SLL +P + + L    A ++K+  A
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.509e-19
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 1
Query:  184 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQA 570
            KR+ +EL  L        SA P ++++F W  TI G + + Y    + +++ FP  YP+  P V F T  +HPN+++ G+ICLDILK++WS    +  +LLSI SLL +P + + L    A ++K+  A
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          
The following BLAST results are available for this feature:
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UBE2C_HUMAN6.775e-2037.21Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UB2R2_RABIT6.775e-2038.10Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE6.775e-2038.10Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN6.775e-2038.10Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UBE2S_DROYA1.156e-1939.02Ubiquitin-conjugating enzyme E2 S OS=Drosophila ya... [more]
UBE2S_DROER1.156e-1939.02Ubiquitin-conjugating enzyme E2 S OS=Drosophila er... [more]
UBC13_ARATH1.156e-1940.00Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBE2S_DROAN1.509e-1938.21Ubiquitin-conjugating enzyme E2 S OS=Drosophila an... [more]
UBE2C_MACFA1.509e-1936.43Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN1.509e-1936.43Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00517 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00517 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623426 ID=BQ623426; Name=BQ623426; organism=Citrus sinensis; type=EST; length=576bp
CAACGAAGCAAGGGGTTGATAGAGGAGCGAGGCGGGGGCGGCTTGACGAC
CTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCTATCGCTCTCCGATCC
TGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGGTTCGTTGTAGTTTCA
ATTTTAATAATCCCCTGAAGAGTCATGGCTTCAAAGCGTATTTTGAAGGA
ACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCTG
TGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCCTTCTGAT
AGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCTGA
TTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACC
CGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAACAG
TGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCCTT
GCTTACTGATCCAATCCTGACGACCCTCTTGTACCCGGAGATTGCCCACA
TGTACAAGTCCGACCAGGCCAAATAT
back to top