BQ623426

Overview
NameBQ623426
Unique NameBQ623426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.413e-17
Identity = 46/141 (32.62%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  175 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            +A  R+ +E K  +KD P    A P        ++ +W+  I G   +P+ GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI+++ + I  LL +P +      E   +Y  ++ +Y
Sbjct:    4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITINQLFIGIQELLNEPNIQEPAQAEAYTIYCQNRVEY 144          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.413e-17
Identity = 44/133 (33.08%), Postives = 79/133 (59.40%), Query Frame = 1
Query:  178 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            A  R+ K+L +L   P T  +  P AED+ +++ T+  P +  Y GG F  + +  P++P +PPKV    KV+HPNI+  G++CL+IL+E W P L+++ V++ +  L  +P  +  L  + AH   +++ ++
Sbjct:   25 AQLRVQKDLSELSL-PSTMKTHFPSAEDIMNFELTVR-PDEGFYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEF 155          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.845e-17
Identity = 45/141 (31.91%), Postives = 78/141 (55.32%), Query Frame = 1
Query:  175 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            +A+ R+ +E K  +KD P    A PV       ++F+W+  I G  D+ + GG++ + + F  D+P  PPK  F   +FHPN+  +G++CL +L E   W P+++I ++L+ I  LL  P +      E   +Y  ++A+Y
Sbjct:    4 IAAGRLAEERKHWRKDHPFGFIAKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEY 144          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: U2D2L_HUMAN (Putative ubiquitin-conjugating enzyme E2 D2-like protein OS=Homo sapiens GN=UBE2DNL PE=5 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 42/75 (56.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:  175 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFH 399
            MA K I KE  +L +DP   CSAGPV +DM HWQATI  P+DS Y GGVF   + FP DY FKPPK+ F   ++H
Sbjct:    1 MALKLIHKEFLELARDPQPHCSAGPVWDDMLHWQATITRPNDSSYLGGVFF--LKFPSDYLFKPPKIKFTNGIYH 73          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.147e-17
Identity = 47/141 (33.33%), Postives = 75/141 (53.19%), Query Frame = 1
Query:  175 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            +A  R+ +E K  +KD P    A P        ++ + +  I G   +P+ GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +P +      E   ++  D+ +Y
Sbjct:    4 IALSRLAQERKAWRKDHPLGLVAVPTKNPDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEY 144          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC6_SCHPO (Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe GN=ubc6 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.147e-17
Identity = 45/119 (37.82%), Postives = 65/119 (54.62%), Query Frame = 1
Query:  178 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPILTT 525
            A KR++KE   LQK+P     A P  E++  W   I GP D+PY GG +  T+ FPPDYPFKPP +   T        +N  +CL   D   + W+P+  +S +L+ + S +T   +TT
Sbjct:    6 AYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITP--SGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDEITT 122          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.368e-17
Identity = 46/130 (35.38%), Postives = 77/130 (59.23%), Query Frame = 1
Query:  196 KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSICLDIL--KEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            ++  DL+++     +A PV+EDM  W+  I G  +S + G VF +TIHF  +Y + PP V F T  FHPN++ + G  C+D L   E+W+   T+S +LL++  +L++P+L   +  E A +   D++ Y
Sbjct:   11 RDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLY 140          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC84_DROME (Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophila melanogaster GN=Ubc84D PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.368e-17
Identity = 42/135 (31.11%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  178 ASKRILKELKDL-QKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            A++R+ +EL DL +    T  +     E +  W   ++ P  +PY  G F + I+FPP YPF PPK+ F+TK++HPN++  G +CL I+  + W P     +VL ++ +++ +P     L  ++A  +  +  K+
Sbjct:    3 ATRRLTRELSDLVEAKMSTLRNIESSDESLLMWTGLLV-PEKAPYNKGAFRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVREHKKF 136          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.157e-17
Identity = 45/130 (34.62%), Postives = 77/130 (59.23%), Query Frame = 1
Query:  196 KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSICLDIL--KEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            ++  DL+++     +A PV+EDM  W+  I G  +S + G VF +TIHF  +Y + PP V F T  FHPN++ + G  C+D L   ++W+   T+S +LL++  +L++P+L   +  E A +   D++ Y
Sbjct:   11 RDFYDLKENNYKGITARPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILTKDESLY 140          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 1
Query:  175 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 507
            +A+ R+ KEL + Q +PPT      V +++  W   ++G   + YA   + + + FP  YP + P+V F      HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct:   15 IATNRLQKELVEWQMNPPTGFKH-KVTDNLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125          
The following BLAST results are available for this feature:
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UBC9_MESAU1.413e-1732.62SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]
UBC12_YARLI1.413e-1733.08NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UBC9_CAEEL1.845e-1731.91SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele... [more]
U2D2L_HUMAN2.410e-1756.00Putative ubiquitin-conjugating enzyme E2 D2-like p... [more]
UBC9_PAGMA3.147e-1733.33SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC6_SCHPO3.147e-1737.82Ubiquitin-conjugating enzyme E2 6 OS=Schizosacchar... [more]
UBE2U_HUMAN5.368e-1735.38Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBC84_DROME5.368e-1731.11Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophi... [more]
UBE2U_MACFA9.157e-1734.62Ubiquitin-conjugating enzyme E2 U OS=Macaca fascic... [more]
UBC16_ARATH1.196e-1638.39Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00517 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00517 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623426 ID=BQ623426; Name=BQ623426; organism=Citrus sinensis; type=EST; length=576bp
CAACGAAGCAAGGGGTTGATAGAGGAGCGAGGCGGGGGCGGCTTGACGAC
CTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCTATCGCTCTCCGATCC
TGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGGTTCGTTGTAGTTTCA
ATTTTAATAATCCCCTGAAGAGTCATGGCTTCAAAGCGTATTTTGAAGGA
ACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCTG
TGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCCTTCTGAT
AGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCTGA
TTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACC
CGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAACAG
TGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCCTT
GCTTACTGATCCAATCCTGACGACCCTCTTGTACCCGGAGATTGCCCACA
TGTACAAGTCCGACCAGGCCAAATAT
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