BQ623426

Overview
NameBQ623426
Unique NameBQ623426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2225 contig Csv1_Contig2225:32..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.544e-56
Identity = 102/134 (76.12%), Postives = 113/134 (84.33%), Query Frame = 1 
Query:  175 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DP     L PEIA +YK+D+ KY
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKY 134
[Close]
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.544e-56
Identity = 102/134 (76.12%), Postives = 113/134 (84.33%), Query Frame = 1 
Query:  175 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DP     L PEIA +YK+D+ KY
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKY 134
[Close]
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.544e-56
Identity = 102/134 (76.12%), Postives = 113/134 (84.33%), Query Frame = 1 
Query:  175 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DP     L PEIA +YK+D+ KY
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKY 134
[Close]
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.544e-56
Identity = 102/134 (76.12%), Postives = 113/134 (84.33%), Query Frame = 1 
Query:  175 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DP     L PEIA +YK+D+ KY
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKY 134
[Close]
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 4.492e-56
Identity = 101/134 (75.37%), Postives = 113/134 (84.33%), Query Frame = 1 
Query:  175 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            MA KRI KEL+DL +DPP  CSAGPV +D+FHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DP     L PEIA +YK+D+ KY
Sbjct:    1 MALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKY 134
[Close]
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 7.663e-56
Identity = 99/134 (73.88%), Postives = 112/134 (83.58%), Query Frame = 1 
Query:  175 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            MA KRI KEL DLQ+DPP  CSAGPV +D+FHWQATIMGP DS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DP     L P+IA +YKSD+ KY
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKY 134
[Close]
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 7.663e-56
Identity = 99/134 (73.88%), Postives = 112/134 (83.58%), Query Frame = 1 
Query:  175 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            MA KRI KEL DLQ+DPP  CSAGPV +D+FHWQATIMGP DS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DP     L P+IA +YKSD+ KY
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKY 134
[Close]
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 7.663e-56
Identity = 99/134 (73.88%), Postives = 112/134 (83.58%), Query Frame = 1 
Query:  175 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            MA KRI KEL DLQ+DPP  CSAGPV +D+FHWQATIMGP DS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DP     L P+IA +YKSD+ KY
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKY 134
[Close]
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.001e-55
Identity = 99/133 (74.44%), Postives = 116/133 (87.22%), Query Frame = 1 
Query:  178 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            +SKRI KEL DL +DPP SCSAGPV +D++HWQA+IMGPSDSPYAGGVF ++IHFP DYPFKPPKV F TK++HPNINS+G+ICLDILK+QWSPALT+SKVLLSICSLLTD      L PEIA +YK+D+AKY
Sbjct:    3 SSKRIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKY 135
[Close]
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.001e-55
Identity = 101/134 (75.37%), Postives = 112/134 (83.58%), Query Frame = 1 
Query:  175 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSN SICLDIL+ QWSPALTISKVLLSICSLL DP     L PEIA +YK+D+ KY
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKY 134
The following BLAST results are available for this feature:
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UB2D3_MOUSE1.544e-5676.12Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA1.544e-5676.12Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN1.544e-5676.12Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UB2D2_PIG1.544e-5676.12Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UBCD1_DROME4.492e-5675.37Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UB2D1_MOUSE7.663e-5673.88Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN7.663e-5673.88Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN7.663e-5673.88Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC5_YEAST1.001e-5574.44Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UB2D3_BOVIN1.001e-5575.37Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00517 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00517 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623426 ID=BQ623426; Name=BQ623426; organism=Citrus sinensis; type=EST; length=576bp
CAACGAAGCAAGGGGTTGATAGAGGAGCGAGGCGGGGGCGGCTTGACGAC
CTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCTATCGCTCTCCGATCC
TGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGGTTCGTTGTAGTTTCA
ATTTTAATAATCCCCTGAAGAGTCATGGCTTCAAAGCGTATTTTGAAGGA
ACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCTG
TGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCCTTCTGAT
AGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCTGA
TTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACC
CGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAACAG
TGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCCTT
GCTTACTGATCCAATCCTGACGACCCTCTTGTACCCGGAGATTGCCCACA
TGTACAAGTCCGACCAGGCCAAATAT
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