BQ623426

Overview
NameBQ623426
Unique NameBQ623426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.946e-15
Identity = 47/135 (34.81%), Postives = 68/135 (50.37%), Query Frame = 1
Query:  184 KRILKELKDLQKDP---PTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            +RI  E   +  D      S     V E++F W+  I GP +S Y    F + I    DYP+  PKV F T + H N+N  G ICL+ILK+  W+ +L I  ++ SI  LL  P        E+A +Y++D+  Y
Sbjct:    7 RRIQNEYNKINNDKNLYADSFQINMVDENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDKLSY 141          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.025e-15
Identity = 46/136 (33.82%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  175 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLS-ICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            MAS    +E+ D+ K   +      V +D+  +  T  GP+DS Y GGV+ + +  P  YP+K P V F  K++HPN++ S+G++CLD++ + WSP   +  V  S +  LL  P  +     E A +   D+A Y
Sbjct:    1 MASPSKRREM-DMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDRAAY 135          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.563e-15
Identity = 34/97 (35.05%), Postives = 58/97 (59.79%), Query Frame = 1
Query:  259 DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL------------DILKEQWSPALTISKVLLSICSLLTDP 513
            ++F WQ TI+GP ++ Y GG F   + FP +YP  PP V F ++++HPN+  +G +C+            ++  E+W+P  T+  ++LSI S+L+ P
Sbjct:   36 NVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSP 132          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.563e-15
Identity = 47/143 (32.87%), Postives = 71/143 (49.65%), Query Frame = 1
Query:  187 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPS-DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL------------KEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            R  +EL D +K  P+         ++F W   +M  + DS Y GG F   + FP D+PF PP+  F   ++HPN+  +G +C+ IL             E WSP  T+  VL+SI SLL DP + +    + A  Y+ +  +Y
Sbjct:   14 RQYRELTDPKKAIPSFHIELEDDSNIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSGDPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQY 156          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.563e-15
Identity = 40/112 (35.71%), Postives = 66/112 (58.93%), Query Frame = 1
Query:  175 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 507
            +A+ R+ KE  + Q +PP+      V++++  W   + G   + YA   + + + FP  YP + P+V F+     HP+I SNG ICLD+L + WSPA+ +S + LSI S+L+
Sbjct:   15 IATNRLQKEFMEWQTNPPSGFKHR-VSDNLQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSILSMLS 125          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.571e-15
Identity = 46/131 (35.11%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  178 ASKRILKELKDLQKD-PPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSD 564
            ASKR+ KEL DL K+ PP          ++  W   ++ P   PY    F + I FP +YP KPP + F TK++HPNI+ +G +CL ++  E W P     +VL ++  L++ P L   +  E+A +   D
Sbjct:    3 ASKRVAKELDDLSKELPPYLRHLSSDDANVLVWHMLLL-PDQLPYRLKAFGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPLISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLELADLLTQD 132          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBE2W_DANRE (Probable ubiquitin-conjugating enzyme E2 W OS=Danio rerio GN=ube2w PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.119e-14
Identity = 45/112 (40.18%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  184 KRILKELKDLQKDPPTSCSAGP--VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVF--HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 507
            KR+ KEL  LQ DPP   +     V   +  W   + G   + Y G  F +   F   YPF+ P+V F  +    HP++ SNG ICL IL E WSPAL++  V LSI S+L+
Sbjct:    6 KRLQKELLALQNDPPAGMTLNERSVQNTITEWFIDMEGAQGTVYEGEKFQLLFKFSSRYPFESPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC32_ARATH (Ubiquitin carrier protein E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.119e-14
Identity = 44/127 (34.65%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  178 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK---EQWSPALTISKVLLSICSLL-TDP--ILTTLLYPE 540
            A KRIL+E+K++Q +P     + P+ E++F WQ  I GP D+ + GG++   I  P DYPFKPP     T   +    +N  ICL I     E W P+ ++   L+++ + + T P   L ++ YP+
Sbjct:   12 AVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPADYPFKPPSFMLLTP--NGRFETNTKICLSISNYHPEHWQPSWSVRTALVALIAFMPTSPNGALGSVDYPK 136          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBE2W_MOUSE (Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.909e-14
Identity = 45/112 (40.18%), Postives = 59/112 (52.68%), Query Frame = 1
Query:  184 KRILKELKDLQKDPPTSCSAGP--VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK--VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 507
            KR+ KEL  LQ DPP   +     V   +  W   + G   + Y G  F +   F   YPF  P+V F  +    HP++ SNG ICL IL E WSPAL++  V LSI S+L+
Sbjct:    6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBCX_YEAST (Ubiquitin-conjugating enzyme E2-21 kDa OS=Saccharomyces cerevisiae GN=PEX4 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.909e-14
Identity = 51/146 (34.93%), Postives = 78/146 (53.42%), Query Frame = 1
Query:  187 RILKE----LKDLQKDPPTSC-------SAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAF-RTKVFHPNINS-NGSICLDILK-EQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYK-SDQAKY 576
            RI+KE    LK L  D P +        S  P+ E D+  W+A I GPSD+PY    F + I  P  YP  PPK++F +  + H N+ S  G ICL+ILK E+W+P   +   + ++  LL +P+  + L  +I ++ +  D + Y
Sbjct:   21 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAY 166          
The following BLAST results are available for this feature:
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UBC1_MIMIV2.946e-1534.81Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UBC6_ARATH5.025e-1533.82Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UBC7_WHEAT6.563e-1535.05Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC3_YEAST6.563e-1532.87Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UBC17_ARATH6.563e-1535.71Probable ubiquitin carrier protein E2 17 OS=Arabid... [more]
UB2L6_RAT8.571e-1535.11Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus... [more]
UBE2W_DANRE1.119e-1440.18Probable ubiquitin-conjugating enzyme E2 W OS=Dani... [more]
UBC32_ARATH1.119e-1434.65Ubiquitin carrier protein E2 32 OS=Arabidopsis tha... [more]
UBE2W_MOUSE1.909e-1440.18Probable ubiquitin-conjugating enzyme E2 W OS=Mus ... [more]
UBCX_YEAST1.909e-1434.93Ubiquitin-conjugating enzyme E2-21 kDa OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00517 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00517 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623426 ID=BQ623426; Name=BQ623426; organism=Citrus sinensis; type=EST; length=576bp
CAACGAAGCAAGGGGTTGATAGAGGAGCGAGGCGGGGGCGGCTTGACGAC
CTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCTATCGCTCTCCGATCC
TGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGGTTCGTTGTAGTTTCA
ATTTTAATAATCCCCTGAAGAGTCATGGCTTCAAAGCGTATTTTGAAGGA
ACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCTG
TGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCCTTCTGAT
AGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCTGA
TTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACC
CGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAACAG
TGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCCTT
GCTTACTGATCCAATCCTGACGACCCTCTTGTACCCGGAGATTGCCCACA
TGTACAAGTCCGACCAGGCCAAATAT
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