BQ623426

Overview
NameBQ623426
Unique NameBQ623426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.111e-13
Identity = 29/71 (40.85%), Postives = 49/71 (69.01%), Query Frame = 1
Query:  250 VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSP 459
            V ++M  +     GPS++PY+GG++ V +  P +YP+K P + F  ++FHPNI+  +GS+CLD++ + WSP
Sbjct:   25 VNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSP 95          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBE2F_CHICK (NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 1
Query:  184 KRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD 510
            K ++KE+ +L+ + P +C    P    + ++Q T++ P +  Y GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD
Sbjct:   35 KLLVKEVAELEANLPCTCKVNFPDPNKLHYFQLTVI-PDEGYYQGGKFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTD 149          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 41/125 (32.80%), Postives = 64/125 (51.20%), Query Frame = 1
Query:  208 DLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLS-ICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            DL K   +      + + M  +     GP DS Y GGV+ + +  P  YP+K P V F TK++HPN++  +GS+CLD++ + WSP   +  V  + +  LL  P  +  L  E A +   D+  Y
Sbjct:   11 DLMKLMMSDYKVEMINDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPTY 135          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 40/125 (32.00%), Postives = 64/125 (51.20%), Query Frame = 1
Query:  208 DLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLS-ICSLLTDPILTTLLYPEIAHMYKSDQAKY 576
            D+ K   +      + + M  +     GP DS Y GGV+ + +  P  YP+K P V F TK++HPN++  +GS+CLD++ + WSP   +  V  + +  LL  P  +  L  E A +   D+  Y
Sbjct:   11 DMMKLMMSDYKVETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPAY 135          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC34_ARATH (Ubiquitin carrier protein E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 1
Query:  184 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPILTT 525
            KR+ KE + L K+P +   A P   D+  W   + G   +P+AGG +   I FPP+YP+KPP +   T   +    +   ICL   D   E W+P  ++S +L  + S + D   TT
Sbjct:    8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTP--NGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTT 122          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 38/113 (33.63%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  178 ASKRILKELKDLQKDPPTSCS-AGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDP 513
            A  RI K++ DL+     S S   P+  ++ H +   + P +  Y GG F   I    +YP  PPKV    K++HPNI+  G++CL+IL++ W+P L ++ +L+ +  L   P
Sbjct:   24 AQIRIQKDVTDLEIPSTMSTSWPDPIKLNVLHLE---IRPDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSP 133          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.601e-13
Identity = 42/131 (32.06%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  178 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQ 567
            A  RI K++ +L    P +C       +D+ +++  I  P +  Y GG F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +P     L  E A + ++++
Sbjct:   30 AQLRIQKDINELNL--PKTCEIEFSDHDDLLNFKLVIC-PDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNR 157          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC33_ARATH (Probable ubiquitin carrier protein E2 33 OS=Arabidopsis thaliana GN=UBC33 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.703e-13
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 1
Query:  184 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPILTT 525
            KR+ KE + L K+P +   A P   D+  W   + G   +P+AGG +   I FPP+YP+KPP +   T   +    +   ICL   D   E W+P  ++S +L  + S + D   TT
Sbjct:    8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTP--NGRFVTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTT 122          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.703e-13
Identity = 42/131 (32.06%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  178 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQ 567
            A  RI K++ +L    P +C       +D+ +++  I  P +  Y GG F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +P     L  E A + ++++
Sbjct:   30 AQLRIQKDITELNL--PKTCEIEFSDHDDLLNFKLVIC-PDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNR 157          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBCX_PICPA (Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia pastoris GN=PEX4 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.142e-13
Identity = 54/179 (30.17%), Postives = 81/179 (45.25%), Query Frame = 1
Query:  178 ASKRILKELKDLQKDPPTSCSAG-----------PVAEDMFH-WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRT----------------------------------KVFHPNINSN-GSICLDILKEQWSPALTISKVLLSICSLLTDPILTTLLYPEIAHMYKSDQAK 573
            A KR+L+E + + K+     SA            PV+ED F+ W A + GP+D+ Y    + + I  P +YP +PPK  F                                    ++ HPNI  N G ICLDIL+ +W+PA T+S  L +I  LL DP   + L  ++A++ K +  K
Sbjct:    3 AEKRLLQEYRSILKEQRQKGSASTLSSNGILDLKPVSEDNFYKWTAKLKGPTDTGYQDAFWELQIDIPSNYPTQPPKFTFIVSDDIPRNRRQRQTNQIQDDDEFEGAEKEVLRHCYRMPHPNIAFNTGEICLDILQAKWTPAWTLSSALTAIVLLLNDPEPLSPLDIDMANLMKINDLK 181          
The following BLAST results are available for this feature:
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UBC8_SCHPO2.111e-1340.85Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UBE2F_CHICK2.757e-1334.48NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN... [more]
UBC5_ARATH2.757e-1332.80Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]
UBC4_ARATH2.757e-1332.00Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]
UBC34_ARATH2.757e-1333.33Ubiquitin carrier protein E2 34 OS=Arabidopsis tha... [more]
UBC12_SCHPO2.757e-1333.63NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UBC12_XENTR3.601e-1332.06NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC33_ARATH4.703e-1333.33Probable ubiquitin carrier protein E2 33 OS=Arabid... [more]
UBC12_XENLA4.703e-1332.06NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBCX_PICPA6.142e-1330.17Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia p... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00517 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00517 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623426 ID=BQ623426; Name=BQ623426; organism=Citrus sinensis; type=EST; length=576bp
CAACGAAGCAAGGGGTTGATAGAGGAGCGAGGCGGGGGCGGCTTGACGAC
CTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCTATCGCTCTCCGATCC
TGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGGTTCGTTGTAGTTTCA
ATTTTAATAATCCCCTGAAGAGTCATGGCTTCAAAGCGTATTTTGAAGGA
ACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCTG
TGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCCTTCTGAT
AGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCTGA
TTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACC
CGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAACAG
TGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCCTT
GCTTACTGATCCAATCCTGACGACCCTCTTGTACCCGGAGATTGCCCACA
TGTACAAGTCCGACCAGGCCAAATAT
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