BQ623426

Overview
NameBQ623426
Unique NameBQ623426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2225 contig Csv1_Contig2225:32..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11
Identity = 28/76 (36.84%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  286 MGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDP 513
            + P +  Y GG F  ++ F   YP +PP V     ++HPNI+ +G+ICL++L+E WSP + +  V+L +  L  +P
Sbjct:   65 ISPEEGVYRGGHFRFSVVFRDTYPIEPPTVKCLNTIYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEP 140          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1
Query:  283 IMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDP 513
            I+ P +  Y  G     + F   YP +PPKV    K+FHPNI+  G++CL+IL+E WSPAL +  ++  +  L  +P
Sbjct:   67 IVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEP 143          
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Match: UBC12_KLULA (NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces lactis GN=UBC12 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11
Identity = 27/74 (36.49%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  292 PSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDP 513
            P    YAGG +   +     YP +PP V    +++HPNI+ +G++CL++L+E W+PAL I  +++ I  L  +P
Sbjct:   67 PDIGYYAGGTYYFNVFIKDTYPMEPPVVKCMHRIYHPNIDIDGNVCLNLLREDWTPALDIQSIIIGILFLFHEP 140          
The following BLAST results are available for this feature:
BLAST of BQ623426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UBC12_ASHGO1.158e-1136.84NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii ... [more]
UBC12_YEAST1.513e-1138.96NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBC12_KLULA1.513e-1136.49NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces la... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00517 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00517 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623426 ID=BQ623426; Name=BQ623426; organism=Citrus sinensis; type=EST; length=576bp
CAACGAAGCAAGGGGTTGATAGAGGAGCGAGGCGGGGGCGGCTTGACGAC
CTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCTATCGCTCTCCGATCC
TGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGGTTCGTTGTAGTTTCA
ATTTTAATAATCCCCTGAAGAGTCATGGCTTCAAAGCGTATTTTGAAGGA
ACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCTG
TGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCCTTCTGAT
AGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCTGA
TTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACC
CGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAACAG
TGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCCTT
GCTTACTGATCCAATCCTGACGACCCTCTTGTACCCGGAGATTGCCCACA
TGTACAAGTCCGACCAGGCCAAATAT
back to top