BQ623429

Overview
NameBQ623429
Unique NameBQ623429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5616 contig Csv1_Contig5616:104..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of BQ623429 vs. ExPASy Swiss-Prot
Match: SC132_CANGA (Protein transport protein SEC13-2 OS=Candida glabrata GN=SEC132 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.728e-14
Identity = 43/117 (36.75%), Postives = 70/117 (59.83%), Query Frame = 3 
Query:    6 DNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV--AREGDQWEGKVLHD--FKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGEWRQV 344
            DN VK+WK  +          L+ H D V  V W+P   L +S +AS S D + ++WT   + + + W+   +++  F+  +  VSWSL+GN+LAV+D + NVT+W+E+ DG+W +V
Sbjct:  186 DNLVKIWKFDDDQETYVVADTLEGHKDAVTAVDWSPTT-LLQSYVASVSNDKQCLVWTQDHSSKKNDWKKISVNEGKFEQKLGSVSWSLSGNLLAVSDDDKNVTIWKESGDGKWEEV 301
The following BLAST results are available for this feature:
BLAST of BQ623429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SC132_CANGA1.728e-1436.75Protein transport protein SEC13-2 OS=Candida glabr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00520 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00520 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623429 ID=BQ623429; Name=BQ623429; organism=Citrus sinensis; type=EST; length=553bp
GTTGTGATAATACCGTGAAGGTGTGGAAGCTGTACAATGGAATTTGGAAG
ATGGACTGCTTTCCAGCTCTTCAAATGCATACTGATTGGGTTAGAGATGT
TGCTTGGGCTCCCAACTTGGGGCTTCCAAAATCTACTATTGCAAGTGCAT
CGGAGGATGGGAAAGTTATTATATGGACTGTGGCCAGGGAAGGAGATCAA
TGGGAAGGTAAGGTGTTGCATGACTTCAAGACCCCTGTTTATAGAGTCAG
CTGGTCACTGACTGGAAACATATTGGCTGTGGCTGATGGAAACAACAATG
TAACACTGTGGGAAGAAGCAGTGGATGGGGAGTGGCGACAGGTGACTGCA
GTTGGGCCGTAAGACTCTTTTAAGTTTTTCAAATTTTTATCGTGAAATAC
AAGATTGCATTTTAGAACCTCTTTATAATTTCTTTTGAGGACCCTAAACC
GCAATCCCCACTCTTTTTATGTTACTGCATAGCTGAGCATCATTGATGGA
TATATCTGAACCCTAAATTTCTTAACTTTAGCTTCAACGAAGAATCTCCT
TTT
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