BQ623438

Overview
NameBQ623438
Unique NameBQ623438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1788 contig Csv1_Contig1788:17..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_RAT (Histone H4 OS=Rattus norvegicus GN=Hist1h4b PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.455e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_PONAB (Histone H4 OS=Pongo abelii PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.455e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_PLADU (Histone H4 OS=Platynereis dumerilii PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.455e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_PIG (Histone H4 OS=Sus scrofa PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.455e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_ORENI (Histone H4 OS=Oreochromis niloticus PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.455e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_ONCMY (Histone H4 OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.455e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_MYTTR (Histone H4 OS=Mytilus trossulus PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.455e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_MYTGA (Histone H4 OS=Mytilus galloprovincialis PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.455e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_MYTED (Histone H4 OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.455e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_MYTCH (Histone H4 OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.455e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_RAT1.455e-3697.44Histone H4 OS=Rattus norvegicus GN=Hist1h4b PE=1 S... [more]
H4_PONAB1.455e-3697.44Histone H4 OS=Pongo abelii PE=3 SV=1[more]
H4_PLADU1.455e-3697.44Histone H4 OS=Platynereis dumerilii PE=1 SV=2[more]
H4_PIG1.455e-3697.44Histone H4 OS=Sus scrofa PE=1 SV=2[more]
H4_ORENI1.455e-3697.44Histone H4 OS=Oreochromis niloticus PE=3 SV=2[more]
H4_ONCMY1.455e-3697.44Histone H4 OS=Oncorhynchus mykiss PE=1 SV=2[more]
H4_MYTTR1.455e-3697.44Histone H4 OS=Mytilus trossulus PE=3 SV=3[more]
H4_MYTGA1.455e-3697.44Histone H4 OS=Mytilus galloprovincialis PE=3 SV=3[more]
H4_MYTED1.455e-3697.44Histone H4 OS=Mytilus edulis PE=3 SV=3[more]
H4_MYTCH1.455e-3697.44Histone H4 OS=Mytilus chilensis PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00529 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00529 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623438 ID=BQ623438; Name=BQ623438; organism=Citrus sinensis; type=EST; length=475bp
GAATAAAAGAAGCATAAAATTAAAGAACTGAAAAGAGAGAAAAGGAAAGC
AGAAGAGAAATGTCAGGAAGAGGAAAGGGAGGCAAAGGATTAGGAAAGGG
AGGAGCGAAGAGGCACCGCAAGGTGCTGAGGGATAACATTCAGGGGATCA
CAAAGCCGGCTATCCGGCGGCTGGCGAGGCGTGGCGGAGTCAAGCGTATC
AGCGGTCTGATTTACGAGGAGACTCGCGGGGTTTTAAAGATCTTTTTGGA
GAACGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTCGTCGTAAGA
CTGTCACCGCCATGGATGTTGTTTATGCTTTGAAGAGGCAGGGCAGGACC
CTTTACGGTTTCGGTGGTTAAATTTAGGGTTTCTTAATTTTTATGTTTTT
GAATGCTATTGAGTATCTGATGACTTTGTAATTTGTATTGATATTTGGTC
TATCAATGAAATTTTATGTTAATTG
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