BQ623438

Overview
NameBQ623438
Unique NameBQ623438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1788 contig Csv1_Contig1788:17..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_PSAMI (Histone H4 OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 7.219e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_PISOC (Histone H4 OS=Pisaster ochraceus PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 7.219e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_PISBR (Histone H4 OS=Pisaster brevispinus PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 7.219e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_PARLI (Histone H4 OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 7.219e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_LYTPI (Histone H4 OS=Lytechinus pictus PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 7.219e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_HOLTU (Histone H4 OS=Holothuria tubulosa PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 7.219e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_CAEEL (Histone H4 OS=Caenorhabditis elegans GN=his-1 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 7.219e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_APLCA (Histone H4 OS=Aplysia californica GN=His.H4 PE=3 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.231e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+ KTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKCKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H48_CHICK (Histone H4 type VIII OS=Gallus gallus GN=H4-VIII PE=3 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.231e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQ RTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQERTLY 99
[Close]
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_SOLST (Histone H4 OS=Solaster stimpsoni PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.608e-35
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 3 
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVT+MDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTSMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_PSAMI7.219e-3696.15Histone H4 OS=Psammechinus miliaris PE=1 SV=2[more]
H4_PISOC7.219e-3696.15Histone H4 OS=Pisaster ochraceus PE=3 SV=2[more]
H4_PISBR7.219e-3696.15Histone H4 OS=Pisaster brevispinus PE=3 SV=2[more]
H4_PARLI7.219e-3696.15Histone H4 OS=Paracentrotus lividus PE=3 SV=2[more]
H4_LYTPI7.219e-3696.15Histone H4 OS=Lytechinus pictus PE=3 SV=2[more]
H4_HOLTU7.219e-3696.15Histone H4 OS=Holothuria tubulosa PE=3 SV=2[more]
H4_CAEEL7.219e-3696.15Histone H4 OS=Caenorhabditis elegans GN=his-1 PE=1... [more]
H4_APLCA1.231e-3596.15Histone H4 OS=Aplysia californica GN=His.H4 PE=3 S... [more]
H48_CHICK1.231e-3596.15Histone H4 type VIII OS=Gallus gallus GN=H4-VIII P... [more]
H4_SOLST1.608e-3594.87Histone H4 OS=Solaster stimpsoni PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00529 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00529 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623438 ID=BQ623438; Name=BQ623438; organism=Citrus sinensis; type=EST; length=475bp
GAATAAAAGAAGCATAAAATTAAAGAACTGAAAAGAGAGAAAAGGAAAGC
AGAAGAGAAATGTCAGGAAGAGGAAAGGGAGGCAAAGGATTAGGAAAGGG
AGGAGCGAAGAGGCACCGCAAGGTGCTGAGGGATAACATTCAGGGGATCA
CAAAGCCGGCTATCCGGCGGCTGGCGAGGCGTGGCGGAGTCAAGCGTATC
AGCGGTCTGATTTACGAGGAGACTCGCGGGGTTTTAAAGATCTTTTTGGA
GAACGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTCGTCGTAAGA
CTGTCACCGCCATGGATGTTGTTTATGCTTTGAAGAGGCAGGGCAGGACC
CTTTACGGTTTCGGTGGTTAAATTTAGGGTTTCTTAATTTTTATGTTTTT
GAATGCTATTGAGTATCTGATGACTTTGTAATTTGTATTGATATTTGGTC
TATCAATGAAATTTTATGTTAATTG
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