BQ623444

Overview
NameBQ623444
Unique NameBQ623444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:644..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.806e-30
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   60 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116

HSP 2 Score: 34.2686 bits (77), Expect = 1.806e-30
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA+DPEAFAE
Sbjct:   44 SFDPLGLAEDPEAFAE 59
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.307e-30
Identity = 53/57 (92.98%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  212 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268

HSP 2 Score: 35.8094 bits (81), Expect = 2.307e-30
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADDPEAFAE
Sbjct:  196 SFDPLGLADDPEAFAE 211
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.307e-30
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 34.2686 bits (77), Expect = 2.307e-30
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA+DPEAFAE
Sbjct:  193 SFDPLGLAEDPEAFAE 208
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.307e-30
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 34.2686 bits (77), Expect = 2.307e-30
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA+DPEAFAE
Sbjct:  193 SFDPLGLAEDPEAFAE 208
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.307e-30
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 34.2686 bits (77), Expect = 2.307e-30
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA+DPEAFAE
Sbjct:  193 SFDPLGLAEDPEAFAE 208
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.307e-30
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            ++VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  210 LEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 35.8094 bits (81), Expect = 2.307e-30
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADDPEAFAE
Sbjct:  194 SFDPLGLADDPEAFAE 209
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.005e-30
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  210 LKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266

HSP 2 Score: 34.2686 bits (77), Expect = 3.005e-30
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA+DPEAFAE
Sbjct:  194 SFDPLGLAEDPEAFAE 209
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.005e-30
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA PVNNNAWAYATNFVPGK
Sbjct:  207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263

HSP 2 Score: 35.8094 bits (81), Expect = 3.005e-30
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADDPEAFAE
Sbjct:  191 SFDPLGLADDPEAFAE 206
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.005e-30
Identity = 53/56 (94.64%), Postives = 56/56 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 245
            +KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  206 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261

HSP 2 Score: 35.8094 bits (81), Expect = 3.005e-30
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADDPEAFAE
Sbjct:  190 SFDPLGLADDPEAFAE 205
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.912e-30
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 34.2686 bits (77), Expect = 3.912e-30
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA+DPEAFAE
Sbjct:  195 SFDPLGLAEDPEAFAE 210
The following BLAST results are available for this feature:
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB2D_SOLLC1.806e-3096.49Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB28_PEA2.307e-3092.98Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB2C_SOLLC2.307e-3096.49Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC2.307e-3096.49Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SOLLC2.307e-3096.49Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_PETSP2.307e-3094.74Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB25_NICPL3.005e-3094.74Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB23_SOYBN3.005e-3094.74Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE3.005e-3094.64Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2F_SOLLC3.912e-3094.74Chlorophyll a-b binding protein 3B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00535 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00535 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623444 ID=BQ623444; Name=BQ623444; organism=Citrus sinensis; type=EST; length=343bp
GTGACTGACCCATTGTACCCAGGTGGCAGCCTTTGATCCATTGGGTTTGG
CTGATGACCCGGAGGCTTTTGCTGAGCGTCAAGGTTAAGGAAATCAAGAA
TGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTG
TCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCT
GTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTG
AGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGT
AAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGAT
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