BQ623444

Overview
NameBQ623444
Unique NameBQ623444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:644..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.912e-30
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 34.2686 bits (77), Expect = 3.912e-30
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA+DPEAFAE
Sbjct:  195 SFDPLGLAEDPEAFAE 210
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.912e-30
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267

HSP 2 Score: 35.8094 bits (81), Expect = 3.912e-30
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADDPEAFAE
Sbjct:  195 SFDPLGLADDPEAFAE 210
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.555e-30
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  208 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264

HSP 2 Score: 29.261 bits (64), Expect = 4.555e-30
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA+DPE  AE
Sbjct:  192 SFDPLGLAEDPERSAE 207

HSP 3 Score: 25.0238 bits (53), Expect = 4.555e-30
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1 
Query:    1 VTDPLYPGGSL*SIG 45
            + DPLYPGGS   +G
Sbjct:  183 IVDPLYPGGSFDPLG 197
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.094e-30
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 33.113 bits (74), Expect = 5.094e-30
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA DPEAFAE
Sbjct:  194 SFDPLGLATDPEAFAE 209
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.633e-30
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVK IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  211 LKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 34.2686 bits (77), Expect = 6.633e-30
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA+DPEAFAE
Sbjct:  195 SFDPLGLAEDPEAFAE 210
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.647e-30
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  181 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237

HSP 2 Score: 36.965 bits (84), Expect = 6.647e-30
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            AFDPLGLADDPEAFAE
Sbjct:  165 AFDPLGLADDPEAFAE 180
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 8.638e-30
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264

HSP 2 Score: 36.965 bits (84), Expect = 8.638e-30
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            AFDPLGLADDPEAFAE
Sbjct:  192 AFDPLGLADDPEAFAE 207
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.464e-29
Identity = 53/57 (92.98%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  211 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 33.113 bits (74), Expect = 1.464e-29
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA DPEAFAE
Sbjct:  195 SFDPLGLATDPEAFAE 210
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.464e-29
Identity = 53/57 (92.98%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  211 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 33.113 bits (74), Expect = 1.464e-29
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA DPEAFAE
Sbjct:  195 SFDPLGLATDPEAFAE 210
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.465e-29
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264

HSP 2 Score: 32.3426 bits (72), Expect = 1.465e-29
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGL DDPE FAE
Sbjct:  192 SFDPLGLGDDPERFAE 207
The following BLAST results are available for this feature:
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB2E_SOLLC3.912e-3094.74Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2A_SPIOL3.912e-3094.74Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_APIGR4.555e-3094.74Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SINAL5.094e-3096.49Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB25_TOBAC6.633e-3094.74Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_SOLLC6.647e-3091.23Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_LEMGI8.638e-3091.23Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_ARATH1.464e-2992.98Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH1.464e-2992.98Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB48_MAIZE1.465e-2994.74Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00535 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00535 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623444 ID=BQ623444; Name=BQ623444; organism=Citrus sinensis; type=EST; length=343bp
GTGACTGACCCATTGTACCCAGGTGGCAGCCTTTGATCCATTGGGTTTGG
CTGATGACCCGGAGGCTTTTGCTGAGCGTCAAGGTTAAGGAAATCAAGAA
TGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTG
TCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCT
GTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTG
AGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGT
AAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGAT
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