BQ623444

Overview
NameBQ623444
Unique NameBQ623444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:644..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.050e-28
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263

HSP 2 Score: 34.2686 bits (77), Expect = 2.050e-28
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            AFDPLGLADDP+ FAE
Sbjct:  191 AFDPLGLADDPDTFAE 206
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.050e-28
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263

HSP 2 Score: 34.2686 bits (77), Expect = 2.050e-28
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            AFDPLGLADDP+ FAE
Sbjct:  191 AFDPLGLADDPDTFAE 206
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.602e-28
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   68 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124

HSP 2 Score: 26.5646 bits (57), Expect = 4.602e-28
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPL    DPEAFAE
Sbjct:   52 SFDPLASLTDPEAFAE 67
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.866e-27
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266

HSP 2 Score: 30.0314 bits (66), Expect = 2.866e-27
Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLA+ P+AFAE
Sbjct:  194 SFDPLGLAERPQAFAE 209
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.866e-27
Identity = 48/57 (84.21%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            +KVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265

HSP 2 Score: 34.6538 bits (78), Expect = 2.866e-27
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            AFDPLGLADDP++FAE
Sbjct:  193 AFDPLGLADDPDSFAE 208
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.072e-26
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 3 
Query:   69 LLSVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 248
            L  +KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  197 LAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256

HSP 2 Score: 26.5646 bits (57), Expect = 1.072e-26
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 1 
Query:    1 VTDPLYPGGSL*SIG 45
            VTDP+YPGGS   +G
Sbjct:  175 VTDPIYPGGSFDPLG 189
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.496e-25
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 245
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264

HSP 2 Score: 31.5722 bits (70), Expect = 1.496e-25
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 2 
Query:   32 FDPLGLADDPEAFAE 76
            FDPLGLADDP  FAE
Sbjct:  194 FDPLGLADDPTTFAE 208
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.533e-25
Identity = 49/56 (87.50%), Postives = 50/56 (89.29%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 245
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267

HSP 2 Score: 33.113 bits (74), Expect = 2.533e-25
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            +FDPLGLADDP+ FAE
Sbjct:  196 SFDPLGLADDPDTFAE 211
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.585e-25
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 245
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267

HSP 2 Score: 31.187 bits (69), Expect = 5.585e-25
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 2 
Query:   32 FDPLGLADDPEAFAE 76
            FDPLGLADDP  FAE
Sbjct:  197 FDPLGLADDPVTFAE 211
[Close]
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.778e-23
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 3 
Query:   78 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 242
            +KVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:  218 LKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272

HSP 2 Score: 34.2686 bits (77), Expect = 3.778e-23
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 2 
Query:   29 AFDPLGLADDPEAFAE 76
            AFDPLGLADDP+ FAE
Sbjct:  202 AFDPLGLADDPDTFAE 217
The following BLAST results are available for this feature:
BLAST of BQ623444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB23_ORYSJ2.050e-2889.47Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.050e-2889.47Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_RAPSA4.602e-2896.49Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_WHEAT2.866e-2791.23Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB215_PEA2.866e-2784.21Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB22_SOYBN1.072e-2688.33Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_SOLLC1.496e-2587.50Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_PHYPA2.533e-2587.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_HORVU5.585e-2585.71Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNSA3.778e-2378.18Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00535 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00535 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623444 ID=BQ623444; Name=BQ623444; organism=Citrus sinensis; type=EST; length=343bp
GTGACTGACCCATTGTACCCAGGTGGCAGCCTTTGATCCATTGGGTTTGG
CTGATGACCCGGAGGCTTTTGCTGAGCGTCAAGGTTAAGGAAATCAAGAA
TGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTG
TCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCT
GTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTG
AGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGT
AAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGAT
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