BQ623451

Overview
NameBQ623451
Unique NameBQ623451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623451_ssr39 microsatellite BQ623451_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1627 contig Csv1_Contig1627:124..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CSRP3_BOVIN (Cysteine and glycine-rich protein 3 OS=Bos taurus GN=CSRP3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.845e-18
Identity = 56/195 (28.72%), Postives = 92/195 (47.18%), Query Frame = 2
Query:   74 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG----------------SLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG-NYSQLESDLEK 607
            P  G   KC AC+KTVY  +++  + R +HK CF C  C+  L  +   + E  +YC+  + + +   G                 L   F+ +PK  +      + N  K + KF G  +KC  C ++VY  EKV   G  +H++CF+C+  G ++  +N    +G+LYCK  + + F   G  +  L   +EK
Sbjct:    2 PNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPK--QARSATTSSNPSKFA-KF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTGIGFGGLTHQVEK 192          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CSRP1_RAT (Cysteine and glycine-rich protein 1 OS=Rattus norvegicus GN=Csrp1 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.328e-18
Identity = 52/179 (29.05%), Postives = 83/179 (46.37%), Query Frame = 2
Query:   74 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL------------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 574
            P  G  +KC  C KTVY  +++  +   +HK+CF C  CK  L  +        +YC+  + + +   G       GT  + K E L              N NA K + K +G  ++C  C + VY  EKV   G ++H+SCF+C+  G  +  +     +G++YCK  + + F  KG
Sbjct:    2 PNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSMDKGESLGIKHEEAPGHRPTTNPNASKFAQK-IGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 179          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CSRP1_MOUSE (Cysteine and glycine-rich protein 1 OS=Mus musculus GN=Csrp1 PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.079e-17
Identity = 52/179 (29.05%), Postives = 82/179 (45.81%), Query Frame = 2
Query:   74 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL------------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 574
            P  G  +KC  C KTVY  +++  +   +HK+CF C  CK  L  +        +YC+  + + +   G       GT    K E L              N NA K + K +G  ++C  C + VY  EKV   G ++H+SCF+C+  G  +  +     +G++YCK  + + F  KG
Sbjct:    2 PNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQK-IGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 179          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CSRP1_PONAB (Cysteine and glycine-rich protein 1 OS=Pongo abelii GN=CSRP1 PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.405e-17
Identity = 51/179 (28.49%), Postives = 82/179 (45.81%), Query Frame = 2
Query:   74 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL------------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 574
            P  G  +KC  C KTVY  +++  +   +HK+CF C  CK  L  +        +YC+  + + +   G       GT    K E L              N NA K + K +G  ++C  C + VY  EKV   G ++H++CF+C+  G  +  +     +G++YCK  + + F  KG
Sbjct:    2 PNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEESPGHRPTTNPNASKFAQK-IGGSERCPRCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 179          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CSRP1_HUMAN (Cysteine and glycine-rich protein 1 OS=Homo sapiens GN=CSRP1 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.405e-17
Identity = 51/179 (28.49%), Postives = 82/179 (45.81%), Query Frame = 2
Query:   74 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL------------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 574
            P  G  +KC  C KTVY  +++  +   +HK+CF C  CK  L  +        +YC+  + + +   G       GT    K E L              N NA K + K +G  ++C  C + VY  EKV   G ++H++CF+C+  G  +  +     +G++YCK  + + F  KG
Sbjct:    2 PNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQK-IGGSERCPRCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 179          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CSRP1_BOVIN (Cysteine and glycine-rich protein 1 OS=Bos taurus GN=CSRP1 PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.405e-17
Identity = 52/179 (29.05%), Postives = 82/179 (45.81%), Query Frame = 2
Query:   74 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL------------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 574
            P  G  +KC  C KTVY  +++  +   +HK+CF C  CK  L  +        +YC+  + + +   G       GT  + K E L              N N  K + K VG  ++C  C + VY  EKV   G ++H+SCF+C+  G  +  +     +G++YCK  + + F  KG
Sbjct:    2 PNWGGGKKCGVCQKTVYFAEEVQCEGSSFHKSCFLCLVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSMDKGESLGIRHEEAPGHRPTTNPNTSKFAQK-VGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 179          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CSRP1_COTJA (Cysteine and glycine-rich protein 1 OS=Coturnix coturnix japonica GN=CSRP1 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.102e-17
Identity = 52/178 (29.21%), Postives = 82/178 (46.07%), Query Frame = 2
Query:   74 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL-----------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 574
            P  G  +KC  C K VY  +++  +   +HK+CF C  CK  L  +        +YC+  + + +   G       GT    K E L             N NA +++ K VG  D C  C + VY  EKV   G ++H+SCF+C+  G ++  +     +G++YCK  + + F  KG
Sbjct:    2 PNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGYGYGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQK-VGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKG 178          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CSRP1_CHICK (Cysteine and glycine-rich protein 1 OS=Gallus gallus GN=CSRP1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.102e-17
Identity = 52/178 (29.21%), Postives = 82/178 (46.07%), Query Frame = 2
Query:   74 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL-----------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 574
            P  G  +KC  C K VY  +++  +   +HK+CF C  CK  L  +        +YC+  + + +   G       GT    K E L             N NA +++ K VG  D C  C + VY  EKV   G ++H+SCF+C+  G ++  +     +G++YCK  + + F  KG
Sbjct:    2 PNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGYGYGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQK-VGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKG 178          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CRIP2_BOVIN (Cysteine-rich protein 2 OS=Bos taurus GN=CRIP2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.102e-17
Identity = 57/184 (30.98%), Postives = 83/184 (45.11%), Query Frame = 2
Query:   95 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC-RPHFDQLFKRTGS---------LEKSFEGTPKIVKP-EKLVENENAQKVSNK------------FVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYC-KHHHIQLFREKG 574
            KC  CDKTVY  +K+++  + +H+ C RC HC  TL        +G  +C +P +  LF   G           EK     P++  P E  V     +K S              F G  + C  C++ VY  EKV+  G  +HR C +C   G T++P  +  H+G+ YC K  +  LF  KG
Sbjct:    4 KCPKCDKTVYFAEKVSSLGKDWHRFCLRCEHCSKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPSAEKPQVTGPIEVPVARTEERKASGPPKGPSKASSVTTFTGEPNMCPRCNKRVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: XIRP2_MOUSE (Xin actin-binding repeat-containing protein 2 OS=Mus musculus GN=Xirp2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.357e-17
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 2
Query:   71 SPFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 298
            S F   ++ C+ C KTVY ++ L AD + +HK+CFRCHHC   L L N+ S  G +YC+PHF QLFK  G+ ++ F
Sbjct: 3248 SAFLSDKEICIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYDEGF 3323          

HSP 2 Score: 74.7146 bits (182), Expect = 4.693e-13
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  338 ENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 586
            E   A +  + F+  ++ C+ C +TVYP E +  +   +H+SCF+C H    +S  NY +  G++YCK H  QLF+ KGNY +
Sbjct: 3239 EMSRAFQEESAFLSDKEICIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYDE 3321          
The following BLAST results are available for this feature:
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CSRP3_BOVIN4.845e-1828.72Cysteine and glycine-rich protein 3 OS=Bos taurus ... [more]
CSRP1_RAT6.328e-1829.05Cysteine and glycine-rich protein 1 OS=Rattus norv... [more]
CSRP1_MOUSE1.079e-1729.05Cysteine and glycine-rich protein 1 OS=Mus musculu... [more]
CSRP1_PONAB2.405e-1728.49Cysteine and glycine-rich protein 1 OS=Pongo abeli... [more]
CSRP1_HUMAN2.405e-1728.49Cysteine and glycine-rich protein 1 OS=Homo sapien... [more]
CSRP1_BOVIN2.405e-1729.05Cysteine and glycine-rich protein 1 OS=Bos taurus ... [more]
CSRP1_COTJA4.102e-1729.21Cysteine and glycine-rich protein 1 OS=Coturnix co... [more]
CSRP1_CHICK4.102e-1729.21Cysteine and glycine-rich protein 1 OS=Gallus gall... [more]
CRIP2_BOVIN4.102e-1730.98Cysteine-rich protein 2 OS=Bos taurus GN=CRIP2 PE=... [more]
XIRP2_MOUSE5.357e-1747.37Xin actin-binding repeat-containing protein 2 OS=M... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00542 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00542 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623451 ID=BQ623451; Name=BQ623451; organism=Citrus sinensis; type=EST; length=655bp
CTCTTAATATAATAAATCTGAGGTTCGGTTGGACCGGAAGCTAGCTAGCT
AGCAAGCAGCAGCCATGGCATCACCCTTTGGAGGAACCCAACAAAAATGC
ATGGCCTGTGACAAAACTGTGTACCTTGTTGATAAGTTGACGGCCGATAA
TCGGGTCTATCACAAAGCTTGCTTCCGGTGCCACCATTGCAAAGGAACCC
TCAAGCTCAGCAACTTCAATTCCTTTGAGGGGGTCCTGTATTGCAGGCCT
CACTTTGATCAGCTCTTCAAGAGAACTGGCAGCCTGGAGAAGAGTTTTGA
AGGAACACCAAAGATTGTGAAACCTGAAAAGCTCGTTGAAAATGAGAATG
CACAGAAAGTCTCCAACAAGTTTGTGGGCACCAGAGATAAATGTGTGGGA
TGCGATAGGACTGTTTATCCAACTGAGAAGGTTTCTGTAAATGGCGCCGC
ATATCATAGGAGCTGCTTCAAGTGCAGCCATGGAGGTTGCACCATCAGCC
CATCAAATTATATTGCCCATGAGGGGAAACTCTACTGCAAGCATCATCAC
ATACAACTCTTCAGGGAGAAAGGAAACTACAGCCAGCTTGAGAGTGATCT
TGAGAAGAGTCAAATCTCTGAGAAGCCAACTCCTGTCCAAATTGCTGCCG
AATCA
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