BQ623451

Overview
NameBQ623451
Unique NameBQ623451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623451_ssr39 microsatellite BQ623451_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1627 contig Csv1_Contig1627:124..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CRIP2_HUMAN (Cysteine-rich protein 2 OS=Homo sapiens GN=CRIP2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.010e-15
Identity = 55/184 (29.89%), Postives = 80/184 (43.48%), Query Frame = 2
Query:   95 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC-RPHFDQLFKRTGS---------LEKSFEGTPKIVKP-EKLVENENAQKVSNK------------FVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYC-KHHHIQLFREKG 574
            KC  CDKTVY  +K+++  + +HK C +C  C  TL        +G  +C +P +  LF   G           EK     P++  P E        +K S              F G  + C  C + VY  EKV+  G  +HR C +C   G T++P  +  H+G+ YC K  +  LF  KG
Sbjct:    4 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CRIP2_MOUSE (Cysteine-rich protein 2 OS=Mus musculus GN=Crip2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 55/184 (29.89%), Postives = 81/184 (44.02%), Query Frame = 2
Query:   95 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC-RPHFDQLFKRTGS---------LEKSFEGTPKIVKP-EKLVENENAQKVSNK------------FVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYC-KHHHIQLFREKG 574
            KC  CDKTVY  +K+++  + +HK C +C  C  TL        +G  +C +P +  LF   G           EK     P++  P E  V     +K S              F G  + C  C++ VY  EKV+  G  +HR C +C     T++P  +  H+G+ YC K  +  LF  KG
Sbjct:    4 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCNKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPQTEAPQVTGPIEVPVVRTEERKTSGPPKGPSKASSVTTFTGEPNMCPRCNKRVYFAEKVTSLGKDWHRPCLRCERCSKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CRIP2_RAT (Cysteine-rich protein 2 OS=Rattus norvegicus GN=Crip2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.939e-15
Identity = 55/184 (29.89%), Postives = 81/184 (44.02%), Query Frame = 2
Query:   95 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC-RPHFDQLFKRTGS---------LEKSFEGTPKIVKP-EKLVENENAQKVSNK------------FVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYC-KHHHIQLFREKG 574
            KC  CDKTVY  +K+++  + +HK C +C  C  TL        +G  +C +P +  LF   G           EK     P++  P E  V     +K S              F G  + C  C++ VY  EKV+  G  +HR C +C     T++P  +  H+G+ YC K  +  LF  KG
Sbjct:    4 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCNKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPPTEAPQVTGPIEVPVVRTEERKTSGPPKGPSKASSVTTFTGEPNMCPRCNKRVYFAEKVTSLGKDWHRPCLRCERCSKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: LIMD2_MOUSE (LIM domain-containing protein 2 OS=Mus musculus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.117e-14
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 2
Query:   89 QQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 298
            ++ C AC KTVY +++L AD  ++H +CF C HC   L L ++ +  G  YCRPHF QLFK  G+ ++ F
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDEGF 107          

HSP 2 Score: 68.9366 bits (167), Expect = 2.575e-11
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 2
Query:  383 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 586
            ++ C  C +TVYP E++  +   +H SCF C H    +S  +Y A  G+ YC+ H  QLF+ KGNY +
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDE 105          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: LIMA1_HUMAN (LIM domain and actin-binding protein 1 OS=Homo sapiens GN=LIMA1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.117e-14
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 2
Query:   89 QQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTP 310
            ++ C+ C KTVY +++L A+ +V+H +CFRC +C   L L  + S  G +YC+PHF+QLFK  G+ ++ F   P
Sbjct:  387 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHRP 460          

HSP 2 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 43/130 (33.08%), Postives = 64/130 (49.23%), Query Frame = 2
Query:  308 PKIVKPEKLVEN---ENAQKVSNKFVG-TRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ----------LESDLEKSQISEKPTPVQIAAES 655
            PK + P+    +    +  K   KF    R+ CV C +TVYP E++  N   +H SCF+CS+    +S   Y +  G++YCK H  QLF+ KGNY +            S  E  +I E+P  +  A E+
Sbjct:  358 PKPLSPDSRASSLSESSPPKAMKKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHRPHKDLWASKNENEEILERPAQLANARET 487          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: LIMA1_MOUSE (LIM domain and actin-binding protein 1 OS=Mus musculus GN=Lima1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.459e-14
Identity = 30/70 (42.86%), Postives = 48/70 (68.57%), Query Frame = 2
Query:   89 QQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 298
            ++ C+ C KTVY +++L A+ +V+H +CFRC +C   L L  + S  G +YC+PHF+QLFK  G+ ++ F
Sbjct:  385 KESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGF 454          

HSP 2 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 2
Query:  308 PKIVKPEKLVEN---ENAQKVSNKFVG-TRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 586
            PK + P+    +    +  K + KF    ++ CV C +TVYP E++  N   +H SCF+CS+    +S   Y +  G++YCK H  QLF+ KGNY +
Sbjct:  356 PKPLSPDARTSSLPESSPSKTAKKFQAPAKESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 452          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: LIMD2_RAT (LIM domain-containing protein 2 OS=Rattus norvegicus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.488e-14
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 2
Query:   89 QQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 298
            ++ C AC KTVY +++L AD  ++H +CF C HC   L L ++ +  G  YC+PHF QLFK  G+ ++ F
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCKPHFQQLFKSKGNYDEGF 107          

HSP 2 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 2
Query:  383 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 586
            ++ C  C +TVYP E++  +   +H SCF C H    +S  +Y A  G+ YCK H  QLF+ KGNY +
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCKPHFQQLFKSKGNYDE 105          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: LIMD2_HUMAN (LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.488e-14
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 2
Query:   89 QQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 298
            ++ C AC KTVY +++L AD  ++H +CF C HC   L L ++ +  G  YC+PHF QLFK  G+ ++ F
Sbjct:   37 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGF 106          

HSP 2 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 2
Query:  383 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 586
            ++ C  C +TVYP E++  +   +H SCF C H    +S  +Y A  G+ YCK H  QLF+ KGNY +
Sbjct:   37 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDE 104          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: LIMD2_BOVIN (LIM domain-containing protein 2 OS=Bos taurus GN=LIMD2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.488e-14
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 2
Query:   89 QQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 298
            ++ C AC KTVY +++L AD  ++H +CF C HC   L L ++ +  G  YC+PHF QLFK  G+ ++ F
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHSSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGF 107          

HSP 2 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 2
Query:  383 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 586
            ++ C  C +TVYP E++  +   +H SCF C H    +S  +Y A  G+ YCK H  QLF+ KGNY +
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHSSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDE 105          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CRIP2_PONAB (Cysteine-rich protein 2 OS=Pongo abelii GN=CRIP2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.488e-14
Identity = 54/184 (29.35%), Postives = 78/184 (42.39%), Query Frame = 2
Query:   95 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC-RPHFDQLFKRTGS---------LEKSFEGTPKIVKP-EKLVENENAQKVSNK------------FVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYC-KHHHIQLFREKG 574
            KC  CDKTV   +K+++  + +HK C +C  C  TL        +G  +C +P +  LF   G           EK     P++  P E        +K S              F G  + C  C + VY  EKV+  G  +HR C  C   G T++P  +  H+G+ YC K  +  LF  KG
Sbjct:    4 KCPKCDKTVCFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLHCERCGKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187          
The following BLAST results are available for this feature:
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CRIP2_HUMAN1.010e-1529.89Cysteine-rich protein 2 OS=Homo sapiens GN=CRIP2 P... [more]
CRIP2_MOUSE2.251e-1529.89Cysteine-rich protein 2 OS=Mus musculus GN=Crip2 P... [more]
CRIP2_RAT2.939e-1529.89Cysteine-rich protein 2 OS=Rattus norvegicus GN=Cr... [more]
LIMD2_MOUSE1.117e-1444.29LIM domain-containing protein 2 OS=Mus musculus GN... [more]
LIMA1_HUMAN1.117e-1441.89LIM domain and actin-binding protein 1 OS=Homo sap... [more]
LIMA1_MOUSE1.459e-1442.86LIM domain and actin-binding protein 1 OS=Mus musc... [more]
LIMD2_RAT2.488e-1442.86LIM domain-containing protein 2 OS=Rattus norvegic... [more]
LIMD2_HUMAN2.488e-1442.86LIM domain-containing protein 2 OS=Homo sapiens GN... [more]
LIMD2_BOVIN2.488e-1442.86LIM domain-containing protein 2 OS=Bos taurus GN=L... [more]
CRIP2_PONAB2.488e-1429.35Cysteine-rich protein 2 OS=Pongo abelii GN=CRIP2 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00542 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00542 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623451 ID=BQ623451; Name=BQ623451; organism=Citrus sinensis; type=EST; length=655bp
CTCTTAATATAATAAATCTGAGGTTCGGTTGGACCGGAAGCTAGCTAGCT
AGCAAGCAGCAGCCATGGCATCACCCTTTGGAGGAACCCAACAAAAATGC
ATGGCCTGTGACAAAACTGTGTACCTTGTTGATAAGTTGACGGCCGATAA
TCGGGTCTATCACAAAGCTTGCTTCCGGTGCCACCATTGCAAAGGAACCC
TCAAGCTCAGCAACTTCAATTCCTTTGAGGGGGTCCTGTATTGCAGGCCT
CACTTTGATCAGCTCTTCAAGAGAACTGGCAGCCTGGAGAAGAGTTTTGA
AGGAACACCAAAGATTGTGAAACCTGAAAAGCTCGTTGAAAATGAGAATG
CACAGAAAGTCTCCAACAAGTTTGTGGGCACCAGAGATAAATGTGTGGGA
TGCGATAGGACTGTTTATCCAACTGAGAAGGTTTCTGTAAATGGCGCCGC
ATATCATAGGAGCTGCTTCAAGTGCAGCCATGGAGGTTGCACCATCAGCC
CATCAAATTATATTGCCCATGAGGGGAAACTCTACTGCAAGCATCATCAC
ATACAACTCTTCAGGGAGAAAGGAAACTACAGCCAGCTTGAGAGTGATCT
TGAGAAGAGTCAAATCTCTGAGAAGCCAACTCCTGTCCAAATTGCTGCCG
AATCA
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