BQ623451

Overview
NameBQ623451
Unique NameBQ623451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623451_ssr39 microsatellite BQ623451_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1627 contig Csv1_Contig1627:124..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: LIMC_DICDI (LIM domain-containing protein C OS=Dictyostelium discoideum GN=limC PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.543e-14
Identity = 45/170 (26.47%), Postives = 71/170 (41.76%), Query Frame = 2 
Query:   98 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRT-----GSLEKSFEGTPKIVKPEKLVEN------ENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 574
            C  C K VY  + + A  + YHK C +C HC   L+L  ++  +G  YC+  +D+LF++      G +  SFE  PK+     +            ++V  +   T   C  C +  Y  E    N   +H++CF C      +    Y   EG +YC   +   F   G
Sbjct:    5 CPTCTKRVYAAEAVKACEKQYHKLCLQCFHCHKILQLGQYSERDGQPYCKTDYDRLFRQAGYRGGGVVADSFEPAPKVETTTPVEPTPPPTFLTPTEEVKVQLFPT--NCPKCGKKAYFNELKVYNSRDWHKTCFACFSCNKNLVSGQYSEKEGLIYCPRCYQSKFGPSG 172
[Close]
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: MLP2_DROME (Muscle LIM protein Mlp84B OS=Drosophila melanogaster GN=Mlp84B PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 56/189 (29.63%), Postives = 82/189 (43.39%), Query Frame = 2 
Query:   95 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEK-LVENENAQKVSNKFVGTR------------DKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYI---AHEGKLYCKHHHIQLFREKG-NYSQ----LESD 598
            KC  C K+VY  ++  A   V+HK CF+C  C  +L  +N    E  LYC+    + F   G    +  GT  +    + L EN +   V N   G R            + C  C   VY  E++   G ++H+ CFKC  G C     + +   A +  +YCK  + + F  KG  Y Q    L+SD
Sbjct:   11 KCPRCGKSVYAAEERLAGGYVFHKNCFKCGMCNKSLDSTNCTEHERELYCKTCHGRKFGPKGYGFGTGAGTLSMDNGSQFLRENGDVPSVRN---GARLEPRAIARAPEGEGCPRCGGYVYAAEQMLARGRSWHKECFKC--GTCKKGLDSILCCEAPDKNIYCKGCYAKKFGPKGYGYGQGGGALQSD 194
The following BLAST results are available for this feature:
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
LIMC_DICDI5.543e-1426.47LIM domain-containing protein C OS=Dictyostelium d... [more]
MLP2_DROME8.850e-1229.63Muscle LIM protein Mlp84B OS=Drosophila melanogast... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00542 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00542 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623451 ID=BQ623451; Name=BQ623451; organism=Citrus sinensis; type=EST; length=655bp
CTCTTAATATAATAAATCTGAGGTTCGGTTGGACCGGAAGCTAGCTAGCT
AGCAAGCAGCAGCCATGGCATCACCCTTTGGAGGAACCCAACAAAAATGC
ATGGCCTGTGACAAAACTGTGTACCTTGTTGATAAGTTGACGGCCGATAA
TCGGGTCTATCACAAAGCTTGCTTCCGGTGCCACCATTGCAAAGGAACCC
TCAAGCTCAGCAACTTCAATTCCTTTGAGGGGGTCCTGTATTGCAGGCCT
CACTTTGATCAGCTCTTCAAGAGAACTGGCAGCCTGGAGAAGAGTTTTGA
AGGAACACCAAAGATTGTGAAACCTGAAAAGCTCGTTGAAAATGAGAATG
CACAGAAAGTCTCCAACAAGTTTGTGGGCACCAGAGATAAATGTGTGGGA
TGCGATAGGACTGTTTATCCAACTGAGAAGGTTTCTGTAAATGGCGCCGC
ATATCATAGGAGCTGCTTCAAGTGCAGCCATGGAGGTTGCACCATCAGCC
CATCAAATTATATTGCCCATGAGGGGAAACTCTACTGCAAGCATCATCAC
ATACAACTCTTCAGGGAGAAAGGAAACTACAGCCAGCTTGAGAGTGATCT
TGAGAAGAGTCAAATCTCTGAGAAGCCAACTCCTGTCCAAATTGCTGCCG
AATCA
back to top