BQ623464

Overview
NameBQ623464
Unique NameBQ623464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:1057..1613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_SCHDU (Actin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.770e-30
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRMSKEITA+APSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  314 DRMSKEITAVAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 378
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_CHLRE (Actin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.770e-30
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  313 DRMSKEITALAPSAMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT8_ARATH (Actin-8 OS=Arabidopsis thaliana GN=ACT8 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.145e-29
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDE+GP IVHRKCF
Sbjct:  313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT7_SOLTU (Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.145e-29
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K E+DESGPSIVHRKCF
Sbjct:  313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEFDESGPSIVHRKCF 377
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT2_ARATH (Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.145e-29
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDE+GP IVHRKCF
Sbjct:  313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT2_ABSGL (Actin-2 OS=Absidia glauca GN=ACT2 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.145e-29
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM KEITALAPSSMKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  313 DRMQKEITALAPSSMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 377
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_PUCGR (Actin OS=Puccinia graminis PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.496e-29
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM KEITALAPSSMK+K+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  311 DRMQKEITALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTM_LYTPI (Actin, muscle (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.496e-29
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM KEITALAPSSMKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  108 DRMQKEITALAPSSMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 172
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTM_HELTB (Actin, cytoskeletal OS=Heliocidaris tuberculata PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.496e-29
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM KEITALAPSSMKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  312 DRMQKEITALAPSSMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTM_HELER (Actin, cytoskeletal OS=Heliocidaris erythrogramma PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.496e-29
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM KEITALAPSSMKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  312 DRMQKEITALAPSSMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
ACT_SCHDU8.770e-3095.38Actin OS=Scherffelia dubia PE=2 SV=1[more]
ACT_CHLRE8.770e-3095.38Actin OS=Chlamydomonas reinhardtii PE=2 SV=1[more]
ACT8_ARATH1.145e-2995.38Actin-8 OS=Arabidopsis thaliana GN=ACT8 PE=1 SV=2[more]
ACT7_SOLTU1.145e-2995.38Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1[more]
ACT2_ARATH1.145e-2995.38Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1[more]
ACT2_ABSGL1.145e-2995.38Actin-2 OS=Absidia glauca GN=ACT2 PE=3 SV=1[more]
ACT_PUCGR1.496e-2993.85Actin OS=Puccinia graminis PE=3 SV=1[more]
ACTM_LYTPI1.496e-2993.85Actin, muscle (Fragment) OS=Lytechinus pictus PE=3... [more]
ACTM_HELTB1.496e-2993.85Actin, cytoskeletal OS=Heliocidaris tuberculata PE... [more]
ACTM_HELER1.496e-2993.85Actin, cytoskeletal OS=Heliocidaris erythrogramma ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00555 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00555 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623464 ID=BQ623464; Name=BQ623464; organism=Citrus sinensis; type=EST; length=558bp
CCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGCAGCATGAAG
ATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTGGATTGGAGG
ATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGG
GCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGGAAATGCTTCTAA
GTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTT
TTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACATGGAGAAGTGCTAA
GGTTGGGGCCATTGAAGGAGGCATATCTCGATATTGATGTTATTATACAA
GCTTCTTACAGCGTTTGAGGGGGGCTTATTTCTGTACTCAACCGTCTTCC
TTGCCTTGCATTCATCTGGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCC
TTTTTTTTTTTAAAGTAGGATGTTTGTAGCTGGAGATGAAAAAGTGGTTG
TGATGCCTTTTCTATTTCATTTTTCTAAATTTTCATATTTTGAAGGGTTT
TTTTCTTC
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