BQ623464

Overview
NameBQ623464
Unique NameBQ623464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:1057..1613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT2_PEA (Actin-2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.496e-29
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRMSKEITALAPSSMKIKVVAPPER+YSVWIGGSILASLSTFQQMWISK EYDE GPSIVHRKCF
Sbjct:  312 DRMSKEITALAPSSMKIKVVAPPERRYSVWIGGSILASLSTFQQMWISKAEYDERGPSIVHRKCF 376
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_VOLCA (Actin OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM+KEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  313 DRMTKEITALAPSAMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_PINCO (Actin (Fragment) OS=Pinus contorta PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EY+ESGPSIVHRKCF
Sbjct:   97 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKTEYEESGPSIVHRKCF 161
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_NEUCR (Actin OS=Neurospora crassa GN=act-1 PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  311 DRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_MESVI (Actin OS=Mesostigma viride PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ MWI+K EYDESGPSIVHRKCF
Sbjct:  313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQAMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_GAEGA (Actin OS=Gaeumannomyces graminis var. avenae GN=ACT PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  311 DRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_BOTFU (Actin OS=Botryotinia fuckeliana GN=actA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  311 DRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_AJECG (Actin OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=HCBG_08711 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  311 DRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTG_PENCH (Actin, gamma OS=Penicillium chrysogenum GN=ACT PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  311 DRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTG_EMENI (Actin, gamma OS=Emericella nidulans GN=acnA PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  311 DRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
The following BLAST results are available for this feature:
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
ACT2_PEA1.496e-2995.38Actin-2 OS=Pisum sativum PE=2 SV=1[more]
ACT_VOLCA1.954e-2993.85Actin OS=Volvox carteri PE=3 SV=1[more]
ACT_PINCO1.954e-2995.38Actin (Fragment) OS=Pinus contorta PE=3 SV=1[more]
ACT_NEUCR1.954e-2992.31Actin OS=Neurospora crassa GN=act-1 PE=3 SV=2[more]
ACT_MESVI1.954e-2995.38Actin OS=Mesostigma viride PE=3 SV=1[more]
ACT_GAEGA1.954e-2992.31Actin OS=Gaeumannomyces graminis var. avenae GN=AC... [more]
ACT_BOTFU1.954e-2992.31Actin OS=Botryotinia fuckeliana GN=actA PE=3 SV=1[more]
ACT_AJECG1.954e-2992.31Actin OS=Ajellomyces capsulata (strain ATCC 26029 ... [more]
ACTG_PENCH1.954e-2992.31Actin, gamma OS=Penicillium chrysogenum GN=ACT PE=... [more]
ACTG_EMENI1.954e-2992.31Actin, gamma OS=Emericella nidulans GN=acnA PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00555 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00555 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623464 ID=BQ623464; Name=BQ623464; organism=Citrus sinensis; type=EST; length=558bp
CCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGCAGCATGAAG
ATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTGGATTGGAGG
ATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGG
GCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGGAAATGCTTCTAA
GTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTT
TTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACATGGAGAAGTGCTAA
GGTTGGGGCCATTGAAGGAGGCATATCTCGATATTGATGTTATTATACAA
GCTTCTTACAGCGTTTGAGGGGGGCTTATTTCTGTACTCAACCGTCTTCC
TTGCCTTGCATTCATCTGGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCC
TTTTTTTTTTTAAAGTAGGATGTTTGTAGCTGGAGATGAAAAAGTGGTTG
TGATGCCTTTTCTATTTCATTTTTCTAAATTTTCATATTTTGAAGGGTTT
TTTTCTTC
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