BQ623466

Overview
NameBQ623466
Unique NameBQ623466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623466 vs. ExPASy Swiss-Prot
Match: LHTL6_ARATH (Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.781e-14
Identity = 41/123 (33.33%), Postives = 63/123 (51.22%), Query Frame = 1
Query:   49 PYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKW 417
            P WL+  AN  +V+H++G+YQVF  P+F  +E+    +F               GFK  +  + R   RTI+V  T  I +  PFF D++G  G  GF P + + P  M++  KK  ++S  W
Sbjct:  299 PAWLIAAANLMVVVHVIGSYQVFAMPVFDLLERMMVNKF---------------GFK--HGVVLRFFTRTIYVAFTLFIGVSFPFFGDLLGFFGGFGFAPTSFFLPSIMWLIIKKPRRFSVTW 404          
BLAST of BQ623466 vs. ExPASy Swiss-Prot
Match: LHTL1_ARATH (Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 38/131 (29.01%), Postives = 64/131 (48.85%), Query Frame = 1
Query:   49 PYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPK-----WSTKWLCL 426
            P W +  AN  +V+H++G+YQ+F  P+F  +E           F+ K +      FK     + R + R ++V LT  I +++PFF  ++   G   F P + + P  M++   K PK     W T W+C+
Sbjct:  312 PVWAIATANLFVVMHVIGSYQIFAMPVFDMVE----------TFLVKKL-----NFK--PSTVLRFIVRNVYVALTMFIGIMIPFFGGLLAFFGGFAFAPTSYFLPCIMWLLIYK-PKRFSLSWWTNWVCI 424          
The following BLAST results are available for this feature:
BLAST of BQ623466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
LHTL6_ARATH5.781e-1433.33Lysine histidine transporter-like 6 OS=Arabidopsis... [more]
LHTL1_ARATH4.580e-1129.01Lysine histidine transporter-like 1 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00557 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00557 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623466 ID=BQ623466; Name=BQ623466; organism=Citrus sinensis; type=EST; length=674bp
GGAGACTTGTCGCCCGGAAATTTGCTCACTGGTTTTGGCTTTTATAACCC
ATATTGGCTACTTGACATAGCCAATGCAGCCATTGTCATCCACCTTGTTG
GTGCATACCAAGTTTTCTGCCAACCCCTCTTTGCATTCATTGAAAAACAA
GCTCATCAAAGATTCCCGGATAGCGAATTCATCACAAAGGATATTAAAGT
CCCAATCCCAGGATTTAAGTGCTACAACCTCAACCTCTTCCGGTTGGTTT
GGAGGACAATTTTTGTCATCTTAACAACTGTGATTTCAATGCTTCTCCCA
TTCTTTAACGACGTTGTTGGTCTCCTCGGAGCTCTAGGATTTTGGCCACT
TACAGTTTACTTCCCTGTTGAGATGTATATTGCGCAAAAGAAGATACCAA
AGTGGAGCACAAAATGGCTTTGTCTCCAAATCCTAAGCGTAGCTTGCCTA
ATAATCACCATAGCTGCAGCGGCTGGCTCTATTGCAGGAGTTGTTACTGA
CCTTAAGTCTTATAAGCCCTTCAGCACCAGCTACTAATTCAGTCTGATTA
CAAATGGAAGTAGCCATTGATGATGTTCGACAAGGAAAAGGATCAATCAT
TAGACTTTTCAGTTCTTGGTCATGTTAATATGTCAAGTGCATAAACCGGC
CATGTACTGCTATTTTCATTAGCT
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