BQ623468

Overview
NameBQ623468
Unique NameBQ623468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6998 contig Csv1_Contig6998:248..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Match: DOF54_ARATH (Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.162e-24
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1
Query:  169 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCMK 324
            LKCPRC+S NTKFCYYNNY+LSQPR+FCK+CRRYWTKGG LRNVPVGGGC K
Sbjct:   51 LKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRK 102          
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Match: DOF22_ARATH (Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana GN=DOF2.2 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.048e-24
Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = 1
Query:  169 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCMKN 327
            LKCPRCDS NTKFCY+NNY+L+QPR+FCK+CRRYWT+GG LRNVPVGGGC +N
Sbjct:   94 LKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRN 146          
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Match: DOF14_ARATH (Dof zinc finger protein DOF1.4 OS=Arabidopsis thaliana GN=DOF1.4 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.051e-23
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 1
Query:  169 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCMKN 327
            LKCPRCDS+NTKFCYYNNYSLSQPR+FCK+C+RYWT+GGTLRNVPVGG   KN
Sbjct:   27 LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKN 79          
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Match: DOF35_ARATH (Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana GN=DOF3.5 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.373e-23
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 1
Query:  175 CPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCMKN 327
            CPRC S+NTKFCYYNNYSL+QPRYFCK CRRYWTKGG+LRNVPVGGGC K+
Sbjct:   27 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKS 77          
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Match: DOF18_ARATH (Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.373e-23
Identity = 55/118 (46.61%), Postives = 68/118 (57.63%), Query Frame = 1
Query:  169 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCMK------NXXXXXXXXXXXQDQPLMSSNTSPLTNFPPLSYDTNDLSLAFARLQKQNGGQLGFDDQHD 504
            L CPRC+S NTKFCYYNNYSL+QPRYFCK CRRYWT GG+LRN+PVGGG  K      N             +PL ++N +P    PPL +    +  A A   +      GF + H+
Sbjct:   49 LNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGGGVRKNKRSSSNSSSSSPSSSSSSKKPLFANNNTPT---PPLPHLNPKIGEAAATKVQDLTFSQGFGNAHE 163          
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Match: DOF12_ARATH (Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana GN=DOF1.2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.373e-23
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:  175 CPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCMK 324
            CPRC S+NTKFCYYNNYSLSQPRYFCK CRRYWTKGG+LRN+PVGGGC K
Sbjct:   40 CPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRK 89          
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Match: DOF41_ARATH (Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana GN=DOF4.1 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.793e-23
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  175 CPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCMKNXXXXXXXXXXXQ--------DQPLMSSNTSPLTNFPPLSYDTNDLSLAFA 453
            CPRC+S+NTKFCYYNNYSL+QPRY CKSCRRYWT+GG+LRNVPVGGG  KN                    + P + ++++  +N      + NDLSL+F+
Sbjct:   70 CPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKKLPFPNSSTSSSTKNLPDLNPPFVFTSSASSSNPSKTHQNNNDLSLSFS 170          
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Match: DOF36_ARATH (Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.793e-23
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  169 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCMKNXXXXXXXXXXXQDQPLMSSNTSPLTNFPPLS 420
            L CPRCDSTNTKFCY+NNYSL+QPR+FCK+CRRYWT+GG+LRNVPVGGG  +N                 +++TS LT+ P  S
Sbjct:   76 LNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGSLRNVPVGGGFRRNKRSKSRSKSTVVVSTDNTTSTSSLTSRPSYS 159          
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Match: DOF17_ARATH (Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana GN=DOF1.7 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.342e-23
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1
Query:  169 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCMKN 327
            LKCPRCDS NTKFCYYNNY+LSQPR+FCK+CRRYWTKGG LRN+PVGGG  K+
Sbjct:   33 LKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKS 85          
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Match: DOF46_ARATH (Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.058e-23
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 1
Query:  169 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCMKN 327
            + CPRC+STNTKFCYYNNYSL+QPRYFCK CRRYWT+GG+LRN+PVGGG  KN
Sbjct:   53 VNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKN 105          
The following BLAST results are available for this feature:
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DOF54_ARATH6.162e-2486.54Dof zinc finger protein DOF5.4 OS=Arabidopsis thal... [more]
DOF22_ARATH8.048e-2481.13Dof zinc finger protein DOF2.2 OS=Arabidopsis thal... [more]
DOF14_ARATH1.051e-2384.91Dof zinc finger protein DOF1.4 OS=Arabidopsis thal... [more]
DOF35_ARATH1.373e-2386.27Dof zinc finger protein DOF3.5 OS=Arabidopsis thal... [more]
DOF18_ARATH1.373e-2346.61Dof zinc finger protein DOF1.8 OS=Arabidopsis thal... [more]
DOF12_ARATH1.373e-2388.00Dof zinc finger protein DOF1.2 OS=Arabidopsis thal... [more]
DOF41_ARATH1.793e-2350.50Dof zinc finger protein DOF4.1 OS=Arabidopsis thal... [more]
DOF36_ARATH1.793e-2358.33Dof zinc finger protein DOF3.6 OS=Arabidopsis thal... [more]
DOF17_ARATH2.342e-2383.02Dof zinc finger protein DOF1.7 OS=Arabidopsis thal... [more]
DOF46_ARATH3.058e-2381.13Dof zinc finger protein DOF4.6 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00559 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00559 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623468 ID=BQ623468; Name=BQ623468; organism=Citrus sinensis; type=EST; length=674bp
AAAATTCAACTTTGTTTCAATTATTCTGAAGACTGTTTGATTATTGTTGC
ATGGATGGATGCTTCAAGTGGACAACATCAGGAAATGGCTACTCATTCAT
TGGAAAGCATGTTGGTTTGCTCAAAAGCACAACAAGAAAGGAAGCCAAGG
CCTCAACCAGAACAAGCTCTCAAATGCCCAAGATGTGACTCCACCAACAC
AAAATTCTGCTACTACAACAACTACAGCCTCTCTCAGCCAAGATACTTCT
GCAAATCTTGCAGGAGGTATTGGACCAAAGGCGGCACACTCAGAAATGTT
CCGGTGGGTGGAGGGTGCATGAAAAACAAACGGTCGTCATCCTCGTCATC
AAAGAGAAGCCAAGATCAACCATTGATGAGTTCCAACACAAGCCCTCTCA
CCAATTTCCCTCCCTTGAGTTATGACACCAATGACTTGAGTCTTGCATTT
GCTAGGCTCCAAAAGCAAAACGGTGGGCAACTAGGGTTTGACGATCAGCA
TGATTTTTCTATTTTGGGGAACCCAGTAAGTAGCCACTGTGACATTCTTG
GAAACCCTAGCATTAGCAGCAGCACTTCAGCTACAACAACCCCAGCATTT
CTTGATGCACTAAGAAGTGGATTCCTAGACACCCACAACAATTTTCAGAA
TTTGTATTATGGGGTTTGGGAATG
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