BQ623468

Overview
NameBQ623468
Unique NameBQ623468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6998 contig Csv1_Contig6998:248..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Match: DOF33_ARATH (Dof zinc finger protein DOF3.3 OS=Arabidopsis thaliana GN=DOF3.3 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.571e-19
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1
Query:  169 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCMKN 327
            L CPRC S  TKFCYYNNY+++QPR+FCK+C+RYWT GGT+RNVPVG G  KN
Sbjct:  110 LPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKN 162          
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Match: DOF55_ARATH (Dof zinc finger protein DOF5.5 OS=Arabidopsis thaliana GN=DOF5.5 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.570e-19
Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = 1
Query:  169 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCMKN 327
            L CPRC+S  TKFCYYNNY+++QPR+FCK+C+RYWT GGT+R+VP+G G  KN
Sbjct:   54 LPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTSGGTMRSVPIGAGRRKN 106          
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Match: DOF43_ARATH (Dof zinc finger protein DOF4.3 OS=Arabidopsis thaliana GN=DOF4.3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.968e-19
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 1
Query:  175 CPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGG 312
            C RCDS NTKFCYYNNYS  QPRYFCK+CRRYWT GG LRNVP+GG
Sbjct:   27 CARCDSDNTKFCYYNNYSEFQPRYFCKNCRRYWTHGGALRNVPIGG 72          
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Match: DOF45_ARATH (Dof zinc finger protein DOF4.5 OS=Arabidopsis thaliana GN=DOF4.5 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.962e-18
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1
Query:  175 CPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGG 312
            C RCDS NTKFCYYNNY   QPRYFCK+CRRYWT GG LRN+P+GG
Sbjct:   27 CARCDSDNTKFCYYNNYCEFQPRYFCKNCRRYWTHGGALRNIPIGG 72          
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Match: DOF13_ARATH (Dof zinc finger protein DOF1.3 OS=Arabidopsis thaliana GN=DOF1.3 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 1
Query:  169 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCMKN 327
            L CPRC+S +TKFCYYNNY+++QPR+FC+ C+RYWT GG++R VPVG G  KN
Sbjct:  105 LPCPRCNSADTKFCYYNNYNVNQPRHFCRKCQRYWTAGGSMRIVPVGSGRRKN 157          
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Match: DOF15_ARATH (Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana GN=DOF1.5 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.126e-17
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1
Query:  169 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCMKN 327
            + CPRC S  TKFCY+NNY+++QPR+FCK C+RYWT GG LRNVPVG G  K+
Sbjct:   62 IPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKS 114          
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Match: DOF23_ARATH (Dof zinc finger protein DOF2.3 OS=Arabidopsis thaliana GN=DOF2.3 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.470e-17
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 1
Query:  169 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCMKN 327
            + CPRC S  TKFCY+NNY+++QPR+FCK C RYWT GG LRNVPVG G  K+
Sbjct:   58 IACPRCKSMETKFCYFNNYNVNQPRHFCKGCHRYWTAGGALRNVPVGAGRRKS 110          
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Match: DOF42_ARATH (Dof zinc finger protein DOF4.2 OS=Arabidopsis thaliana GN=DOF4.2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.860e-12
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1
Query:  175 CPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCMKN 327
            CPRC S  T+F Y+NN   SQPRY CK+C R WT GG LRN+PV G C K+
Sbjct:   23 CPRCYSDQTRFSYFNNNKKSQPRYKCKNCCRCWTHGGVLRNIPVTGICDKS 73          
The following BLAST results are available for this feature:
BLAST of BQ623468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DOF33_ARATH1.571e-1971.70Dof zinc finger protein DOF3.3 OS=Arabidopsis thal... [more]
DOF55_ARATH4.570e-1967.92Dof zinc finger protein DOF5.5 OS=Arabidopsis thal... [more]
DOF43_ARATH5.968e-1982.61Dof zinc finger protein DOF4.3 OS=Arabidopsis thal... [more]
DOF45_ARATH2.962e-1878.26Dof zinc finger protein DOF4.5 OS=Arabidopsis thal... [more]
DOF13_ARATH6.599e-1866.04Dof zinc finger protein DOF1.3 OS=Arabidopsis thal... [more]
DOF15_ARATH1.126e-1766.04Dof zinc finger protein DOF1.5 OS=Arabidopsis thal... [more]
DOF23_ARATH1.470e-1766.04Dof zinc finger protein DOF2.3 OS=Arabidopsis thal... [more]
DOF42_ARATH1.860e-1260.78Dof zinc finger protein DOF4.2 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00559 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00559 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623468 ID=BQ623468; Name=BQ623468; organism=Citrus sinensis; type=EST; length=674bp
AAAATTCAACTTTGTTTCAATTATTCTGAAGACTGTTTGATTATTGTTGC
ATGGATGGATGCTTCAAGTGGACAACATCAGGAAATGGCTACTCATTCAT
TGGAAAGCATGTTGGTTTGCTCAAAAGCACAACAAGAAAGGAAGCCAAGG
CCTCAACCAGAACAAGCTCTCAAATGCCCAAGATGTGACTCCACCAACAC
AAAATTCTGCTACTACAACAACTACAGCCTCTCTCAGCCAAGATACTTCT
GCAAATCTTGCAGGAGGTATTGGACCAAAGGCGGCACACTCAGAAATGTT
CCGGTGGGTGGAGGGTGCATGAAAAACAAACGGTCGTCATCCTCGTCATC
AAAGAGAAGCCAAGATCAACCATTGATGAGTTCCAACACAAGCCCTCTCA
CCAATTTCCCTCCCTTGAGTTATGACACCAATGACTTGAGTCTTGCATTT
GCTAGGCTCCAAAAGCAAAACGGTGGGCAACTAGGGTTTGACGATCAGCA
TGATTTTTCTATTTTGGGGAACCCAGTAAGTAGCCACTGTGACATTCTTG
GAAACCCTAGCATTAGCAGCAGCACTTCAGCTACAACAACCCCAGCATTT
CTTGATGCACTAAGAAGTGGATTCCTAGACACCCACAACAATTTTCAGAA
TTTGTATTATGGGGTTTGGGAATG
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