BQ623470

Overview
NameBQ623470
Unique NameBQ623470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3393 contig Csv1_Contig3393:1016..1654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623470 vs. ExPASy Swiss-Prot
Match: S23A3_MOUSE (Solute carrier family 23 member 3 OS=Mus musculus GN=Slc23a3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17
Identity = 48/150 (32.00%), Postives = 80/150 (53.33%), Query Frame = 3
Query:    3 SFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGIGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNE 452
            +  A   S G +    +    +P PP   SRG+  +G+G +L+GL G+  GT+ S  N G ++L + GSRRV  +   F +   +  +   +F SIP P++  +  +  A V + G S     +++S R  FI+GFSIF+ L +P++  E
Sbjct:  327 ALAASTSSLGCYALCGQLLRLSPPPPHACSRGLSLEGLGSVLAGLLGSPLGTASSFPNVGTVSLFQTGSRRVAHLVGLFCMGLGLSPRLAQLFTSIPLPVLGGVLGVTQAVVLSAGFSSFHLADIDSGRNVFIVGFSIFMALLLPRWLRE 476          
BLAST of BQ623470 vs. ExPASy Swiss-Prot
Match: S23A3_HUMAN (Solute carrier family 23 member 3 OS=Homo sapiens GN=SLC23A3 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.587e-16
Identity = 46/150 (30.67%), Postives = 77/150 (51.33%), Query Frame = 3
Query:    3 SFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGIGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNE 452
            +  A   S G +    R     P PP   SRG+  +G+G +L+GL G+  GT+ S  N G + L + GS++V  +     +   +  +   +  +IP P+V  +  +  A V + G S     +++S R  FI+GFSIF+ L +P++F E
Sbjct:  324 ALAASTSSLGCYALCGRLLHLPPPPPHACSRGLSLEGLGSVLAGLLGSPMGTASSFPNVGKVGLIQAGSQQVAHLVGLLCVGLGLSPRLAQLLTTIPLPVVGGVLGVTQAVVLSAGFSSFYLADIDSGRNIFIVGFSIFMALLLPRWFRE 473          
BLAST of BQ623470 vs. ExPASy Swiss-Prot
Match: PUCJ_BACSU (Uric acid permease pucJ OS=Bacillus subtilis GN=pucJ PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.349e-12
Identity = 45/154 (29.22%), Postives = 79/154 (51.30%), Query Frame = 3
Query:    9 VALVESTGAFFAVARYASATPMPPSVLSRGVGWQGIGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIGL---SVPQYFNEYTA 461
            V +VESTG F+A+ +     P+    L +G   +GI IL+ GLF      + + +NAGLL LT+V +R +V  +   ++   ++ K  A+ +++PA ++     + F  V A G+  L   +L +      +  SI +G+   + P  F E+ A
Sbjct:  246 VIIVESTGVFYAIGKICGR-PLTDKDLVKGYRAEGIAILIGGLFNAFPYNTFA-QNAGLLQLTKVKTRNIVVTAGCILVCLGLIPKIAALASAVPAAVLGGATVVMFGMVIASGVKMLSTADLKNQYHLLTIACSIALGIGASTAPGIFAEFPA 397          
The following BLAST results are available for this feature:
BLAST of BQ623470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
S23A3_MOUSE2.268e-1732.00Solute carrier family 23 member 3 OS=Mus musculus ... [more]
S23A3_HUMAN5.587e-1630.67Solute carrier family 23 member 3 OS=Homo sapiens ... [more]
PUCJ_BACSU8.349e-1229.22Uric acid permease pucJ OS=Bacillus subtilis GN=pu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00561 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00561 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623470 ID=BQ623470; Name=BQ623470; organism=Citrus sinensis; type=EST; length=640bp
CCTCCTTTGTTGCTCTTGTTGAGTCAACTGGTGCTTTTTTTGCGGTAGCA
CGGTATGCAAGTGCAACTCCAATGCCACCTTCTGTTCTCAGCCGTGGTGT
GGGTTGGCAGGGAATTGGCATTTTGCTTTCTGGGTTATTTGGAACTGTAA
ACGGAACATCGGTGTCTGTAGAGAATGCTGGTCTTTTGGCCTTGACTAGA
GTTGGCAGTCGAAGGGTTGTCCAAATATCTGCTGGATTCATGATATTCTT
CTCTGTTCTTGGGAAATTTGGAGCAGTCTTTGCTTCAATTCCAGCACCGA
TTGTTGCTGCTTTATATTGCCTTTTCTTTGCATATGTGGGTGCTGGAGGT
CTTAGCTTCCTTCAGTTCTGTAACCTCAACAGTTTCCGAGTAAAGTTCAT
ATTAGGCTTCTCTATCTTCATCGGTCTGTCTGTGCCCCAATACTTCAATG
AGTACACTGCCATTAATGGGTTTCGGTCCAGTTCACACTAGTGGAAGATG
GTTCAACGATATGGTAAACATTCCTTTCTCGTCAGAACCATTTGTTGCTG
GGTGTGTGGCATTTTTCCTCGACAACCCACTGCATAAAAAGGATGGTCAA
GTCAGGAAAGACAGGGGTAGGCATTGGTGGGGACAAGTTC
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