BQ623472

Overview
NameBQ623472
Unique NameBQ623472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10330 contig Csv1_Contig10330:459..1139. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623472 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.723e-21
Identity = 63/211 (29.86%), Postives = 110/211 (52.13%), Query Frame = 1
Query:    1 GVNVDKTLFWRDYLKIHVHPQFNAP---QNPLGFSETIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQ----PEVVMGLPPHSDHGLLTILMQNDHVGLHVR-HDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREY 609
            G+N D  + W +YL +  +   N     ++   F   +++Y   +R +A E+L  + E L ++   +   + ++  S  L  VN YP CP+     E ++G   H+D  +++IL  N+  G  +   DG WI V P   SF +N+GD +++++NG++KSV HR + NG   R+S+    GPPL   + P   L+  + +  LY+   + EY
Sbjct:   98 GLNGD--IGWIEYLLLTTNQDHNFSLYGEDIDKFRGLLKDYKCAMRNMACEILDLMAEGLKIQPKNVFSKLVMDKQSDCLFRVNHYPACPELAINGENLIGFGEHTDPQIISILRSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLANGIDPRLSMIYFCGPPLSEKIAPLPSLM--KGKESLYKEFTWFEY 304          
BLAST of BQ623472 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 56/215 (26.05%), Postives = 109/215 (50.70%), Query Frame = 1
Query:   28 WRDYLKIHVHPQFNAP-------QNPLGFSETIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVV----MGLPPHSDHGLLTILMQNDHVGLHV-RHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSNQL 636
            W +YL ++ +P   +P       +NP  F   ++ Y   V+ +   +L+ + E LG+ +      +  +  S     +N YPPCP+ + +    +G   H+D  ++++L  N   GL +   DG W+ V P   SF +N+GD +++++NG++KSV HR + +   +R+S+    GP L   + P   ++  +    LY+   + EY +   +++L
Sbjct:  105 WVEYLLLNTNPDVISPKSLCIFRENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIRQRNTLSRLLKDEKSDSCFRLNHYPPCPEVQALNRNLVGFGEHTDPQIISVLRSNSTSGLQICLTDGTWVSVPPDQTSFFINVGDALQVMTNGRFKSVKHRVLADTTKSRLSMIYFGGPALSENIAPLPSVM-LKGEECLYKEFTWCEYKKAAYTSRL 318          
BLAST of BQ623472 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 57/179 (31.84%), Postives = 95/179 (53.07%), Query Frame = 1
Query:   82 PLGFSETIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVV--MGLPPHSDHGLLTILMQNDHVGLHVR-HDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREY 609
            P  F E ++EY K ++ ++++ L+ + E L +E       +    +S   L +N YP   +  V   +G   H+D  L+++L  ND  GL +   DG W+ V P   SF V +GD +++++NG++KSV HR V N K +RIS+    GPPL   + P   L+  ++   LY    + +Y
Sbjct:  130 PAIFREAVEEYIKEMKRMSSKFLEMVEEELKIEPKEKLSRLVKVKESDSCLRMNHYPEKEETPVKEEIGFGEHTDPQLISLLRSNDTEGLQICVKDGTWVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPKQD-DCLYNEFTWSQY 307          
BLAST of BQ623472 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 54/169 (31.95%), Postives = 84/169 (49.70%), Query Frame = 1
Query:  103 IQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREY 609
            ++ Y + +  +A  + + + + + +   Y +   +LE   +  L +N Y P      V GL PH+D   LTIL Q+   GL + ++G+WI V P   +  VNIGD  + LSNG Y+SV HR +      R+S+A    P L+T +       D    P  YR   +REY
Sbjct:  156 VETYVQEIARVAQMICEILGKQVNVSSEYFENIFELE---NSFLRLNKYHPSVFGSEVFGLVPHTDTSFLTILSQDQIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVISPANIERMSIAFFVCPYLETEI-------DCFGYPKKYRRFSFREY 314          
BLAST of BQ623472 vs. ExPASy Swiss-Prot
Match: ISP7_SCHPO (Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe GN=isp7 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 1
Query:   91 FSETIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHVGLHVRH--DGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDL 555
            F + + +Y  ++   AN ++  + ESL L      +     T S +LL    YP  P     +G+  H+D   LT++ Q++  GL +       ++ V+P PG+ + N+GD M IL+N +YKS +HR   N  + R ++       +D VV P   L
Sbjct:  215 FRKALVKYHDQMLAFANHVMSLLAESLELSPDAFDEFCSDPTTSIRLL---RYPSSPNR---LGVQEHTDADALTLMSQDNVKGLEILDPVSNCFLSVSPAPGALIANLGDIMAILTNNRYKSSMHRVCNNSGSDRYTIPFFLQGNIDYVVAPLPGL 365          
The following BLAST results are available for this feature:
BLAST of BQ623472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G2OX1_PEA1.723e-2129.86Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
G2OX_PHACN5.014e-2126.05Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
G2OX3_ARATH3.250e-2031.84Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]
G2OX7_ARATH1.972e-1731.95Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
ISP7_SCHPO6.144e-1129.30Sexual differentiation process protein isp7 OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00563 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00563 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623472 ID=BQ623472; Name=BQ623472; organism=Citrus sinensis; type=EST; length=681bp
GGCGTTAATGTCGACAAGACATTATTCTGGAGGGATTACCTGAAGATCCA
CGTCCATCCCCAGTTCAATGCTCCTCAAAACCCTCTTGGCTTCAGTGAAA
CCATACAAGAATATTGCAAAAGAGTTCGAGAATTGGCCAATGAATTACTG
AAAGGGATTATGGAAAGCTTAGGATTGGAAGAAAGCTACATACAAAAGGC
AATGGATCTTGAGACAGACTCTCATCAGTTGCTTGTCGTCAATTTATACC
CTCCTTGTCCACAGCCAGAAGTAGTGATGGGGCTGCCCCCTCATTCGGAT
CATGGCCTCTTAACCATCCTTATGCAGAATGACCATGTAGGTCTTCACGT
ACGGCACGATGGCAAATGGATTCCCGTCAATCCTCCACCCGGCTCTTTCG
TAGTCAACATAGGAGACCACATGGAGATACTAAGTAACGGAAAGTACAAG
AGCGTGTTGCACAGAGCAGTAGTGAACGGCAAAGCAACAAGAATCTCCGT
TGCAACAGCACACGGGCCTCCTCTTGACACGGTCGTGGGCCCTGCTCAGG
ATTTGCTTGACAATGAGAACCGACCCCCGTTGTATCGTGGGATCAAATAT
AGAGAGTATTTGCAGCTTCAACAGAGCAATCAACTGAATGGGAAATCCTG
CTTGGACCACGTCAAAGTCAATATCAATGAT
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