BQ623475

Overview
NameBQ623475
Unique NameBQ623475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623475_ssr31 microsatellite BQ623475_ssr31:31..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2797 contig Csv1_Contig2797:118..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623475 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 67/183 (36.61%), Postives = 116/183 (63.39%), Query Frame = 3
Query:   84 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPA--SNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRR 626
            +++YA VARG VVLAE++  +GN  ++  + L+KL    S+ +  ++ D + F+ L  +G T+  +A+++ GR++P ++LE +   F+  YG   A  APA  +N EF   L + M++   +P  +  L +V+ +VSE++ VM+ENIEK+++RG++IELLVDKT  +   +  FR    ++RR
Sbjct:    2 AIVYAVVARGTVVLAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSDGLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGK-VAHNAPAYAMNDEFSRVLHQQMEFFSSNPS-VDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRR 182          
BLAST of BQ623475 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.775e-28
Identity = 69/174 (39.66%), Postives = 109/174 (62.64%), Query Frame = 3
Query:   84 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKF-TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFR 602
            S++YA VARG VVLAE +  S N ++IA Q L+K+P + +   +Y+ D + F+    +G T   +ADE +GR+IP +FLE +   FV  YG     +A A  +N EF   L + ++Y  + P     ++++K ++++V+ VM+ENI+ +LDRGE++ELLVDKT N+      FR
Sbjct:    2 SILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRA-IHSAQAYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFR 173          
BLAST of BQ623475 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.745e-28
Identity = 64/181 (35.36%), Postives = 106/181 (58.56%), Query Frame = 3
Query:   84 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRR 626
            ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R    +FL  VK  F + Y G +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLAR 180          
BLAST of BQ623475 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.809e-28
Identity = 67/183 (36.61%), Postives = 104/183 (56.83%), Query Frame = 3
Query:   84 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEE--ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRR 626
            ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  +K  F + Y G +A TA    +N EF   L   ++Y   H E     ++A+ +AQV E+KG+M+ NI+ V  RGEK+ELL+DKTENL   +  F++T   + R
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKY---HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLAR 180          
BLAST of BQ623475 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.151e-27
Identity = 63/181 (34.81%), Postives = 105/181 (58.01%), Query Frame = 3
Query:   84 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRR 626
            ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  VK  F + Y G +A TA    +N EF   L   +++  ++ + + ++ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLAR 180          
BLAST of BQ623475 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 3.348e-27
Identity = 63/181 (34.81%), Postives = 105/181 (58.01%), Query Frame = 3
Query:   84 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRR 626
            ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  +K  F + Y G +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLAR 180          
BLAST of BQ623475 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.348e-27
Identity = 63/181 (34.81%), Postives = 105/181 (58.01%), Query Frame = 3
Query:   84 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRR 626
            ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  +K  F + Y G +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLAR 180          
BLAST of BQ623475 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 7.458e-27
Identity = 63/181 (34.81%), Postives = 104/181 (57.46%), Query Frame = 3
Query:   84 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRR 626
            ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY    + F+Y+  +   Y  + D+   R     FL  +K  F + Y G +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLAR 180          
BLAST of BQ623475 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.652e-24
Identity = 65/186 (34.95%), Postives = 105/186 (56.45%), Query Frame = 3
Query:   72 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRK 629
            MSQ  ++YA V+   V L E+   +GNF  +A + + K+P ++ K  Y  + H F+Y+ +N   +  +  E  G QIP  FL  ++ +F+  YG   +  +P    +  F   L+E M+Y   +P+  +K+  V  QVSE KG + + IEK + RGEKIE++VDKTE L  ++  F+S    ++RK
Sbjct:    1 MSQTDILYACVSYKGVCLVEHKIANGNFIDLARRLITKIPPTSKKI-YTSENHNFHYISENDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSFSQNSPTATYDP-FIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRK 182          
The following BLAST results are available for this feature:
BLAST of BQ623475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VA714_ARATH4.225e-3036.61Vesicle-associated membrane protein 714 OS=Arabido... [more]
VA712_ARATH1.775e-2839.66Vesicle-associated membrane protein 712 OS=Arabido... [more]
VAMP7_MOUSE6.745e-2835.36Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_CHICK8.809e-2836.61Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_RAT1.151e-2734.81Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_HUMAN3.348e-2734.81Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN3.348e-2734.81Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_PONAB7.458e-2734.81Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAM7A_DICDI2.652e-2434.95Vesicle-associated membrane protein 7A OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00566 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00566 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623475 ID=BQ623475; Name=BQ623475; organism=Citrus sinensis; type=EST; length=656bp
GAACAAAATAAAAAATAAAAACAAGCCCAGATCTCATCTCATCTCAACTC
AACTCAATTAGTCTCATCAAAATGAGCCAGAAATCGCTGATCTACGCCTT
CGTGGCGCGCGGAAATGTTGTGCTTGCTGAGTACACTGAGTTCAGTGGCA
ATTTCAACTCCATAGCCTATCAGTGCCTCCAGAAACTCCCTGCTTCCAAC
AACAAGTTCACCTACAACTGTGATGCTCACACCTTCAATTATCTCGTCGA
TAATGGTTACACATATTGTGTGGTCGCAGATGAATCGTCCGGAAGACAAA
TACCGATGGCTTTTCTGGAGCGCGTCAAGGATGAATTTGTTTCCAAATAT
GGGGGTGGAAAGGCTGCCACGGCTCCTGCCAATGGCCTGAACAAGGAATT
TGGACCAAAATTGAAAGAACTTATGCAGTACTGTGTTGATCATCCTGAGG
AGATCAGCAAGCTTGCGAAGGTTAAGGCTCAGGTTTCAGAAGTCAAAGGT
GTTATGATGGAGAATATTGAAAAGGTTTTAGATAGGGGGGAAAAGATTGA
GCTACTGGTCGATAAGACTGAGAACCTTCATCAGCAGGCACAAGACTTTC
GGAGTACGGGGACCAAAATGCGGAGGAAATGTGGCTGCAAAATATGAAGA
CAAGCT
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